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Interrogating Emergent Transport Properties for Molecular Motor Ensembles: A Semi-analytical Approach

机译:询问分子电动机集成体的紧急运输性质:一种半解析方法

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Intracellular transport is an essential function in eucaryotic cells, facilitated by motor proteins—proteins converting chemical energy into kinetic energy. It is understood that motorproteins work in teams enabling unidirectional and bidirectional transport of intracellularcargo over long distances. Disruptions of the underlying transport mechanisms, oftencaused by mutations that alter single motor characteristics, are known to cause neurodegenerative diseases. For example, phosphorylation of kinesin motor domain at the serineresidue is implicated in Huntington’s disease, with a recent study of phosphorylated andphosphomimetic serine residues indicating lowered single motor stalling forces. In this article we report the effects of mutations of this nature on transport properties of cargo carriedby multiple wild-type and mutant motors. Results indicate that mutants with altered stallforces might determine the average velocity and run-length even when they are outnumbered by wild type motors in the ensemble. It is shown that mutants gain a competitiveadvantage and lead to an increase in the expected run-length when the load on the cargo isin the vicinity of the mutant’s stalling force or a multiple of its stalling force. A separate contribution of this article is the development of a semi-analytic method to analyze transport ofcargo by multiple motors of multiple types. The technique determines transition ratesbetween various relative configurations of motors carrying the cargo using the transitionrates between various absolute configurations. This enables a computation of biologicallyrelevant quantities like average velocity and run-length without resorting to Monte Carlosimulations. It can also be used to introduce alterations of various single motor parametersto model a mutation and to deduce effects of such alterations on the transport of a commoncargo by multiple motors. Our method is easily implementable and we provide a softwarepackage for general use.
机译:细胞内运输是真核细胞中的一项基本功能,运动蛋白将蛋白转化为动能,从而促进了细胞内运输。可以理解,运动蛋白以团队的方式工作,可以实现长距离内单向和双向运输细胞内货物。已知通常由改变单个运动特征的突变引起的潜在运输机制的破坏引起神经退行性疾病。例如,在亨廷顿氏病中,丝氨酸残基上的驱动蛋白运动域的磷酸化与亨廷顿氏病有关,最近的一项磷酸化和拟膦基丝氨酸残基研究表明,单个运动失速力降低。在本文中,我们报告了这种性质的突变对多种野生型和突变型电动机运载的货物运输特性的影响。结果表明,具有失速力变化的突变体可能确定平均速度和游程长度,即使它们被合奏中的野生型马达所淘汰。结果表明,当货物上的负载处于突变体的失速力或其失速力的倍数附近时,突变体会获得竞争优势并导致预期的行程长度增加。本文的另一项贡献是开发了一种半分析方法来分析多种类型的多个电动机对货物的运输。该技术利用各种绝对配置之间的转换率来确定运载货物的电动机的各种相对配置之间的转换率。这样就可以计算生物学相关的量,例如平均速度和游程长度,而无需求助于Monte Carlo模拟。它也可用于引入各种单个电动机参数的变更,以模拟突变并推论此类变更对多电动机运输普通货物的影响。我们的方法易于实现,并且提供了通用软件包。

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