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首页> 外文期刊>PLoS Computational Biology >A Density-Dependent Switch Drives Stochastic Clustering and Polarization of Signaling Molecules
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A Density-Dependent Switch Drives Stochastic Clustering and Polarization of Signaling Molecules

机译:密度相关的开关驱动信号分子的随机聚类和极化

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Positive feedback plays a key role in the ability of signaling molecules to form highly localized clusters in the membrane or cytosol of cells. Such clustering can occur in the absence of localizing mechanisms such as pre-existing spatial cues, diffusional barriers, or molecular cross-linking. What prevents positive feedback from amplifying inevitable biological noise when an un-clustered “off” state is desired? And, what limits the spread of clusters when an “on” state is desired? Here, we show that a minimal positive feedback circuit provides the general principle for both suppressing and amplifying noise: below a critical density of signaling molecules, clustering switches off; above this threshold, highly localized clusters are recurrently generated. Clustering occurs only in the stochastic regime, suggesting that finite sizes of molecular populations cannot be ignored in signal transduction networks. The emergence of a dominant cluster for finite numbers of molecules is partly a phenomenon of random sampling, analogous to the fixation or loss of neutral mutations in finite populations. We refer to our model as the “neutral drift polarity model.” Regulating the density of signaling molecules provides a simple mechanism for a positive feedback circuit to robustly switch between clustered and un-clustered states. The intrinsic ability of positive feedback both to create and suppress clustering is a general mechanism that could operate within diverse biological networks to create dynamic spatial organization.
机译:正反馈在信号分子在细胞膜或细胞质中形成高度局部簇的能力中起关键作用。在没有定位机制(例如预先存在的空间线索,扩散障碍或分子交联)的情况下,可能会发生这种聚集。当需要非聚集的“关闭”状态时,怎样防止正反馈放大不可避免的生物噪声?而且,当需要“开启”状态时,什么限制了群集的扩散?在这里,我们表明最小的正反馈电路提供了抑制和放大噪声的通用原理:在信号分子的临界密度以下,群集关闭;高于此阈值,将反复生成高度局部化的群集。聚类仅在随机状态下发生,这表明在信号转导网络中不能忽略分子种群的有限大小。有限数量分子的显性簇的出现部分是随机抽样的现象,类似于固定种群中中性突变的固定或丢失。我们将模型称为“中性漂移极性模型”。调节信号分子的密度为正反馈电路提供了一种在聚集状态和非聚集状态之间稳定切换的简单机制。产生和抑制聚类的正反馈的内在能力是一种通用机制,可以在各种生物网络内运行以创建动态空间组织。

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