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Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7

机译:基因组标准协会(GSC)研讨会6和7的会议报告

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This report summarizes the proceedings of the 6th and 7th workshops of the Genomic Standards Consortium (GSC), held back-to-back in 2008. GSC 6 focused on furthering the activities of GSC working groups, GSC 7 focused on outreach to the wider community. GSC 6 was held October 10-14, 2008 at the European Bioinformatics Institute, Cambridge, United Kingdom and included a two-day workshop focused on the refinement of the Genomic Contextual Data Markup Language (GCDML). GSC 7 was held as the opening day of the International Congress on Metagenomics 2008 in San Diego California. Major achievements of these combined meetings included an agreement from the International Nucleotide Sequence Database Consortium (INSDC) to create a “MIGS” keyword for capturing ”Minimum Information about a Genome Sequence” compliant information within INSDC (DDBJ/EMBL /Genbank) records, launch of GCDML 1.0, MIGS compliance of the first set of “Genomic Encyclopedia of Bacteria and Archaea” project genomes, approval of a proposal to extend MIGS to 16S rRNA sequences within a “Minimum Information about an Environmental Sequence”, finalization of plans for the GSC eJournal, “Standards in Genomic Sciences” (SIGS), and the formation of a GSC Board. Subsequently, the GSC has been awarded a Research Co-ordination Network (RCN4GSC) grant from the National Science Foundation, held the first SIGS workshop and launched the journal. The GSC will also be hosting outreach workshops at both ISMB 2009 and PSB 2010 focused on “Metagenomics, Metadata and MetaAnalysis” (M3). Further information about the GSC and its range of activities can be found at http://gensc.org, including videos of all the presentations at GSC 7.
机译:本报告总结了在2008年前后举行的基因组标准协会(GSC)第六次和第七次研讨会的议事情况。GSC6专注于进一步推进GSC工作组的活动,GSC 7专注于向更广泛的社区扩展。 GSC 6于2008年10月10日至14日在英国剑桥的欧洲生物信息学研究所举行,其中包括为期两天的研讨会,重点是完善基因组上下文数据标记语言(GCDML)。 GSC 7作为2008年元基因组学国际大会的开幕日在加利福尼亚州圣地亚哥举行。这些合并会议的主要成就包括国际核苷酸序列数据库协会(INSDC)达成的一项协议,该协议将创建一个“ MIGS”关键字,以在INSDC(DDBJ / EMBL / Genbank)记录中捕获“有关基因组序列的最小信息”兼容信息,并发布。 GCDML 1.0的批准,第一套“细菌和古生菌基因组百科全书”项目基因组的MIGS符合性,批准将MIGS扩展到“关于环境序列的最低限度信息”内的16S rRNA序列的提案,GSC计划的最终定稿eJournal,“基因组科学标准”(SIGS),以及GSC委员会的成立。随后,GSC获得了美国国家科学基金会授予的研究协调网络(RCN4GSC)资助,举办了首届SIGS研讨会并发布了该期刊。 GSC还将在ISMB 2009和PSB 2010上举办针对“宏基因组学,元数据和元分析”(M3)的外展研讨会。有关GSC及其活动范围的更多信息,请访问http://gensc.org,其中包括GSC 7上所有演讲的视频。

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