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Improving Microbiology Research: the Problems Are Less Statistical and More Biological

机译:改善微生物学研究:问题少统计而多生物学

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LETTER I read with great interest the recent article by Casadevall et al. ( 1 ). The authors report outcomes of an American Academy of Microbiology colloquium that concluded by recommending six pathways to improving microbiology research. The recommendations are significantly removed from my expectations. As an experienced veterinarian, bioscience researcher, author, reviewer, and journal associate editor, my inner population clinician (my primary area) first recoiled at the disparity of our points of view. I have Dr. Casadevall to thank for directing the discussion toward some deeper issues. In reality, many problems with bioscience research and publication are held more in common across disciplines than might be evident at first glance. For example, the most frequent research problems that I encounter are poor understanding of biological aspects of experimental design, misunderstanding of the basic biology of research subject species, and overinterpretation of study results. Thus, the errors are less statistical than they are biological and seem different from those reported by the Academy of Microbiology. But are they? One view of the contrast is that these are symptoms of a systemic dysfunction that is variable but nonetheless defining. Consider several aspects of how we get to be scientists and ask if the process is misdirected. “Modern” undergraduate bioscience education has trivialized foundational training in zoological sciences, reducing these critical disciplines to components of other courses, if they are taught at all. Medical training of various types seems to produce good health care providers but instills little comprehension of research skills or ability to evaluate research publications. It is true enough that one does find very competent clinician-researcher folks but not at the frequency of past generations. Finally, as a scientific community, we clearly are training far more Ph.D. candidates than will be served by available employment, thus creating a competitive culture of sensationalism (a substitute term for taking shortcuts to the head of the line for research funding). For the latter assertion, there exists an unfortunate abundance of published support involving some supposedly “high-impact” journals that now seem more like supermarket science fiction. It is no longer clear what the impact factor impacts. Perhaps, it should be discarded and thus present temptation no longer. The foundations of bioscience education seem to be quaking and cracking before our very eyes. Has the time come at length to focus more appropriately on solutions? Solutions can be evaluated and applied within disciplines, but if the underlying problems are systemic across disciplines, is that enough? Should we not take a thorough and introspective look at the entire process, beginning with undergraduate curricula and only then progressing into graduate and postgraduate education? Certainly, that is not a task for the faint of heart. Neither is it a single-discipline task. The idea of One Health is not new, but its resurgence offers opportunity. We should observe that interprofessional research collaboration has become critically important to advancing knowledge and providing beneficial implementations thereof, across all aspects of health care, from the biochemistry laboratory to the clinic. Why? The scientific problems of today are very complex and multidimensional. So must be the solutions. Quoting the One Health website ( http://www.onehealthcommission.org ), “One Health is the collaborative effort of multiple health science professions, together with their related disciplines and institutions—working locally, nationally, and globally—to attain optimal health for people, domestic animals, wildlife, plants, and our environment.” Please note the part about “related disciplines and institutions”—that would be you, dear reader. The open-minded scientist in you is needed in bioscience and medicine. I would like to call for a thoughtful, broad, and forceful effort to reform science education. We are training far too many bioscience students far too narrowly across disciplines, and most do not understand how to communicate outside the silos that are created thereby. The mess that is today’s scientific literature is all the evidence that we need to understand that it is time to tear down the silos and talk honestly among ourselves about real solutions.
机译:信我非常感兴趣地阅读了Casadevall等人的最新文章。 (1)。作者报告了美国微生物学会学术讨论会的成果,该研讨会以推荐改善微生物学研究的六种途径作为结论。这些建议大大超出了我的期望。作为一名经验丰富的兽医,生物科学研究员,作家,评论家和期刊副主编,我的内部人口临床医生(我的主要领域)首先因我们观点的差异而退缩。我感谢Casadevall博士,感谢他将讨论引向了更深层次的问题。实际上,与生物科学研究和出版相关的许多问题在各学科之间的共通性比乍看之下更为明显。例如,我遇到的最常见的研究问题是对实验设计的生物学方面的了解不足,对研究对象物种的基本生物学的误解以及对研究结果的过度理解。因此,这些错误的统计数据少于生物学错误,似乎与微生物学院报告的错误有所不同。但是,是吗?一种对比的观点是,这些是系统功能障碍的症状,这些症状是可变的,但仍然可以定义。考虑一下如何成为科学家的几个方面,并询问该过程是否被误导了。 “现代”生物科学本科生教育使动物科学基础培训变得轻而易举,将这些关键学科简化为其他课程的组成部分(如果有的话)。各种类型的医学培训似乎可以提供良好的医疗保健服务,但对研究技能或评估研究出版物的能力了解甚少。确实确实可以找到非常称职的临床研究人员,但并非以前几代人的频率出现。最后,作为一个科学界,我们显然正在培养更多的博士学位。候选人将比现有的就业机会更能为他们服务,从而营造一种竞争性的轰动性文化(一个替代词,指代捷径成为研究经费首长的捷径)。对于后一种说法,不幸的是,已经发表了大量的支持,涉及一些据称“影响很大”的期刊,这些期刊现在看起来更像是超级市场的​​科幻小说。尚不清楚影响因素会产生什么影响。也许应该将其丢弃,从而不再表现出诱惑。生物科学教育的基础似乎在我们眼前震颤而破裂。是时候抽出时间来更适当地关注解决方案吗?解决方案可以在各学科中进行评估和应用,但是如果潜在问题在各学科中都是系统性的,就足够了吗?我们是否不应该从本科课程开始到进入研究生和研究生教育的整个过程都进行透彻,内省的研究?当然,这不是胆小者的任务。这也不是一个单一学科的任务。 “一个健康”的想法并不新鲜,但它的复兴提供了机会。我们应该观察到,从生化实验室到诊所,跨医疗保健的各个方面对于跨学科的健康发展和提供知识实现至关重要,跨行业的研究合作已经变得至关重要。为什么?当今的科学问题是非常复杂和多维的。因此必须是解决方案。引用“一个健康”网站(http://www.onehealthcommission.org),““一个健康”是多个健康科学专业及其在当地,国家和全球范围内工作的相关学科和机构的共同努力,以实现最佳健康为人类,家畜,野生动植物,植物和我们的环境。”请注意有关“相关学科和机构”的部分,亲爱的读者,那就是您。生物科学和医学需要您中的思想开明的科学家。我想呼吁进行深思熟虑,广泛而有力的改革科学教育的努力。我们在跨学科领域培训了太多的生物科学学生,而且大多数人不了解如何在由此产生的孤岛之外进行交流。当今科学文献中的混乱状况是所有我们需要了解的证据,我们需要了解该是时候打破孤岛并在彼此之间诚实地谈论真正的解决方案了。

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