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首页> 外文期刊>Frontiers in Plant Science >Virtual Plant Tissue: Building Blocks for Next-Generation Plant Growth Simulation
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Virtual Plant Tissue: Building Blocks for Next-Generation Plant Growth Simulation

机译:虚拟植物组织:下一代植物生长模拟的基础

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Motivation: Computational modeling of plant developmental processes is becoming increasingly important. Cellular resolution plant tissue simulators have been developed, yet they are typically describing physiological processes in an isolated way, strongly delimited in space and time. Results: With plant systems biology moving toward an integrative perspective on development we have built the Virtual Plant Tissue (VPTissue) package to couple functional modules or models in the same framework and across different frameworks. Multiple levels of model integration and coordination enable combining existing and new models from different sources, with diverse options in terms of input/output. Besides the core simulator the toolset also comprises a tissue editor for manipulating tissue geometry and cell, wall, and node attributes in an interactive manner. A parameter exploration tool is available to study parameter dependence of simulation results by distributing calculations over multiple systems. Availability: Virtual Plant Tissue is available as open source (EUPL license) on Bitbucket ( https://bitbucket.org/vptissue/vptissue ). The project has a website https://vptissue.bitbucket.io .
机译:动机:植物发育过程的计算模型变得越来越重要。已经开发了细胞分辨率植物组织模拟器,但是它们通常以孤立的方式描述生理过程,在空间和时间上有严格的限制。结果:随着植物系统生物学朝着发展的综合观点发展,我们构建了虚拟植物组织(VPTissue)软件包,以在同一框架和不同框架中耦合功能模块或模型。多个级别的模型集成和协调可以将来自不同来源的现有模型和新模型结合在一起,并在输入/输出方面具有多种选择。除核心模拟器外,该工具集还包括组织编辑器,用于以交互方式操纵组织的几何形状以及细胞,壁和节点的属性。通过在多个系统上分布计算,可以使用参数探索工具来研究仿真结果的参数依赖性。可用性:虚拟植物组织可以在Bitbucket(https://bitbucket.org/vptissue/vptissue)上作为开源(EUPL许可证)获得。该项目有一个网站https://vptissue.bitbucket.io。

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