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A Web-Based System for Bayesian Benchmark Dose Estimation

机译:贝叶斯基准剂量估计的基于Web的系统

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Background: Benchmark dose (BMD) modeling is an important step in human health risk assessment and is used as the default approach to identify the point of departure for risk assessment. A probabilistic framework for dose–response assessment has been proposed and advocated by various institutions and organizations; therefore, a reliable tool is needed to provide distributional estimates for BMD and other important quantities in dose–response assessment. Objectives: We developed an online system for Bayesian BMD (BBMD) estimation and compared results from this software with U.S. Environmental Protection Agency’s (EPA’s) Benchmark Dose Software (BMDS). Methods: The system is built on a Bayesian framework featuring the application of Markov chain Monte Carlo (MCMC) sampling for model parameter estimation and BMD calculation, which makes the BBMD system fundamentally different from the currently prevailing BMD software packages. In addition to estimating the traditional BMDs for dichotomous and continuous data, the developed system is also capable of computing model-averaged BMD estimates. Results: A total of 518 dichotomous and 108 continuous data sets extracted from the U.S. EPA’s Integrated Risk Information System (IRIS) database (and similar databases) were used as testing data to compare the estimates from the BBMD and BMDS programs. The results suggest that the BBMD system may outperform the BMDS program in a number of aspects, including fewer failed BMD and BMDL calculations and estimates. Conclusions: The BBMD system is a useful alternative tool for estimating BMD with additional functionalities for BMD analysis based on most recent research. Most importantly, the BBMD has the potential to incorporate prior information to make dose–response modeling more reliable and can provide distributional estimates for important quantities in dose–response assessment, which greatly facilitates the current trend for probabilistic risk assessment. https://doi.org/10.1289/EHP1289.
机译:背景:基准剂量(BMD)建模是人类健康风险评估中的重要步骤,并且被用作识别风险评估出发点的默认方法。各种机构和组织已经提出并倡导了剂量反应评估的概率框架;因此,需要一种可靠的工具来提供剂量响应评估中BMD和其他重要数量的分布估计。目标:我们开发了用于贝叶斯BMD(BBMD)估算的在线系统,并将该软件的结果与美国环境保护局(EPA)的基准剂量软件(BMDS)进行了比较。方法:该系统建立在贝叶斯框架上,该框架的特点是应用马尔可夫链蒙特卡罗(MCMC)采样进行模型参数估计和BMD计算,这使BBMD系统与当前流行的BMD软件包根本不同。除了估计用于二分和连续数据的传统BMD之外,开发的系统还能够计算模型平均BMD估计。结果:从美国EPA的综合风险信息系统(IRIS)数据库(和类似数据库)中提取的总共518个二分类数据和108个连续数据集被用作测试数据,以比较BBMD和BMDS计划的估算值。结果表明,BBMD系统可能会在许多方面超过BMDS程序,包括更少的失败BMD和BMDL计算和估计。结论:BBMD系统是一个有用的替代工具,可根据最新研究估算具有额外功能的BMD分析BMD。最重要的是,BBMD有可能整合先前的信息,以使剂量反应模型更加可靠,并可以在剂量反应评估中为重要量提供分布估计,这极大地促进了当前的概率风险评估趋势。 https://doi.org/10.1289/EHP1289。

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