首页> 外文期刊>Ecology and Evolution >Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes
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Transcriptomics and differential gene expression in Whitmania pigra (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes

机译:Whitmania pigra(Annelida:Clitellata:Hirudinida:Hirudinidae)的转录组学和差异基因表达:不同的喂养和禁食方式

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The medicinal utility of leeches has been demonstrated through decades of use in modern hospital settings, mainly as relievers of venous congestion following flap or digit replantation surgery. In the present study, we sequence and annotate (through BLAST‐ and Gene Ontology‐based approaches) the salivary transcriptome of the nonblood feeding hirudinid Whitmania pigra and assess the differential gene expression of anticoagulation factors (through both quantitative real‐time PCR [qRT‐PCR] and in silico‐based methods) during feeding and fasting conditions. This was done in order to evince the diversity of putative anticoagulation factors, as well as estimate the levels of upregulation of genes immediately after feeding. In total, we found sequences with demonstrated orthology (via both phylogenetic analyses and BLAST‐based approaches) to seven different proteins that have previously been linked to anticoagulatory capabilities—eglin C, bdellin, granulin, guamerin, hyaluronidase, destabilase I, and lipocalin. All of these were recovered from leeches both in the fasting and in the feeding conditions, but all show signs of upregulation in the feeding leeches. Interestingly, our RNA‐seq effort, coupled with a hypergeometric test, indicated that the differentially expressed genes were disproportionately involved in three main immunological pathways (endocytosis, peroxisome regulation, and lysosome regulation). The results and implications of the finding of anticoagulants in this nonblood feeding leech and the putative upregulation of anticoagulation factors after feeding are briefly discussed in an evolutionary context.
机译:通过在现代医院环境中使用数十年,已证明了水lee的药用价值,主要是作为皮瓣或手指再植术后静脉充血的缓解剂。在本研究中,我们对非血液喂养的水rud惠特曼原虫的唾液转录组进行测序和注释(通过基于BLAST和基因本体论的方法),并评估了抗凝因子的差异基因表达(通过定量实时PCR [qRT- PCR]和基于计算机模拟的方法)。这样做是为了避免推定的抗凝因子的多样性,并估计进食后立即上调基因的水平。总的来说,我们发现了序列(已通过系统发育分析和基于BLAST的方法)证实具有正交性,这些序列先前已与抗凝能力相关联的七个不同蛋白质,例如C蛋白,bdellin蛋白,颗粒蛋白,guamerin,透明质酸酶,去稳定酶I和lipocalin。所有这些都在禁食和进食条件下从水ches中恢复,但是在水中都显示出上调的迹象。有趣的是,我们的RNA测序工作以及超几何测试表明,差异表达的基因不成比例地参与了三种主要的免疫途径(内吞,过氧化物酶调控和溶酶体调控)。在进化的背景下,简要讨论了在这种非血液喂养的水anti中发现抗凝剂的结果和意义以及喂养后抗凝因子的假定上调。

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