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Unsupervised morphological segmentation of tissue compartments in histopathological images

机译:组织病理学图像中组织隔室的无监督形态分割

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摘要

Algorithmic segmentation of histologically relevant regions of tissues in digitized histopathological images is a critical step towards computer-assisted diagnosis and analysis. For example, automatic identification of epithelial and stromal tissues in images is important for spatial localisation and guidance in the analysis and characterisation of tumour micro-environment. Current segmentation approaches are based on supervised methods, which require extensive training data from high quality, manually annotated images. This is often difficult and costly to obtain. This paper presents an alternative data-independent framework based on unsupervised segmentation of oropharyngeal cancer tissue micro-arrays (TMAs). An automated segmentation algorithm based on mathematical morphology is first applied to light microscopy images stained with haematoxylin and eosin. This partitions the image into multiple binary ‘virtual-cells’, each enclosing a potential ‘nucleus’ (dark basins in the haematoxylin absorbance image). Colour and morphology measurements obtained from these virtual-cells as well as their enclosed nuclei are input into an advanced unsupervised learning model for the identification of epithelium and stromal tissues. Here we exploit two Consensus Clustering (CC) algorithms for the unsupervised recognition of tissue compartments, that consider the consensual opinion of a group of individual clustering algorithms. Unlike most unsupervised segmentation analyses, which depend on a single clustering method, the CC learning models allow for more robust and stable detection of tissue regions. The proposed framework performance has been evaluated on fifty-five hand-annotated tissue images of oropharyngeal tissues. Qualitative and quantitative results of the proposed segmentation algorithm compare favourably with eight popular tissue segmentation strategies. Furthermore, the unsupervised results obtained here outperform those obtained with individual clustering algorithms.
机译:在数字化组织病理学图像中对组织的组织学相关区域进行算法分割是迈向计算机辅助诊断和分析的关键步骤。例如,图像中上皮和基质组织的自动识别对于分析和表征肿瘤微环境的空间定位和指导很重要。当前的分割方法基于监督方法,该方法需要来自高质量,手动注释图像的大量训练数据。这通常是困难且昂贵的。本文提出了一种基于口咽癌组织微阵列(TMA)的无监督分割的替代数据独立框架。首先将基于数学形态学的自动分割算法应用于用苏木精和曙红染色的光学显微镜图像。这会将图像划分为多个二进制“虚拟细胞”,每个虚拟细胞都包含一个潜在的“核”(苏木精吸收图像中的暗盆)。从这些虚拟细胞及其封闭的细胞核获得的颜色和形态学测量值被输入到高级无监督学习模型中,以识别上皮和基质组织。在这里,我们针对组织隔室的无监督识别开发了两种共识聚类(CC)算法,这些算法考虑了一组单独的聚类算法的共识。与大多数依赖单一聚类方法的无监督分割分析不同,CC学习模型可对组织区域进行更鲁棒和稳定的检测。拟议的框架性能已在口咽组织的55个手注释组织图像上进行了评估。提出的分割算法的定性和定量结果与八种流行的组织分割策略相比具有优势。此外,此处获得的无监督结果优于使用单独的聚类算法获得的结果。

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