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A Theoretical Exploration of Birhythmicity in the p53-Mdm2 Network

机译:p53-Mdm2网络中节律性的理论探索

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摘要

Experimental observations performed in the p53-Mdm2 network, one of the key protein modules involved in the control of proliferation of abnormal cells in mammals, revealed the existence of two frequencies of oscillations of p53 and Mdm2 in irradiated cells depending on the irradiation dose. These observations raised the question of the existence of birhythmicity, i.e. the coexistence of two oscillatory regimes for the same external conditions, in the p53-Mdm2 network which would be at the origin of these two distinct frequencies. A theoretical answer has been recently suggested by Ouattara, Abou-Jaoudé and Kaufman who proposed a 3-dimensional differential model showing birhythmicity to reproduce the two frequencies experimentally observed. The aim of this work is to analyze the mechanisms at the origin of the birhythmic behavior through a theoretical analysis of this differential model. To do so, we reduced this model, in a first step, into a 3-dimensional piecewise linear differential model where the Hill functions have been approximated by step functions, and, in a second step, into a 2-dimensional piecewise linear differential model by setting one autonomous variable as a constant in each domain of the phase space. We find that two features related to the phase space structure of the system are at the origin of the birhythmic behavior: the existence of two embedded cycles in the transition graph of the reduced models; the presence of a bypass in the orbit of the large amplitude oscillatory regime of low frequency. Based on this analysis, an experimental strategy is proposed to test the existence of birhythmicity in the p53-Mdm2 network. From a methodological point of view, this approach greatly facilitates the computational analysis of complex oscillatory behavior and could represent a valuable tool to explore mathematical models of biological rhythms showing sufficiently steep nonlinearities.
机译:在p53-Mdm2网络(参与控制哺乳动物异常细胞增殖的关键蛋白质模块之一)中进行的实验观察显示,受辐照的细胞中存在p53和Mdm2两种振荡频率,具体取决于辐照剂量。这些发现提出了双节律性的存在的问题,即在相同的外部条件下,两个振荡机制在p53-Mdm2网络中并存,而这正是这两个不同频率的起源。 Ouattara,Abou-Jaoudé和Kaufman最近提出了一个理论答案,他们提出了一个3维差分模型,该模型显示了节奏性,可以重现实验观察到的两个频率。这项工作的目的是通过对该微分模型的理论分析来分析双节律性行为起源的机制。为此,我们首先将模型简化为3维分段线性微分模型,在此模型中,希尔函数已通过阶跃函数进行了逼近;而在第二步中,我们简化为二维分段线性微分模型。通过在相位空间的每个域中将一个自变量设置为常数。我们发现,与系统的相空间结构有关的两个特征是双节律行为的起源:在简化模型的转换图中存在两个嵌入循环;低频大振幅振荡态的轨道中存在旁路。基于此分析,提出了一种实验策略来测试p53-Mdm2网络中双节律性的存在。从方法论的角度来看,这种方法极大地促进了复杂振荡行为的计算分析,并可能成为探索表现出足够陡峭非线性的生物节律数学模型的有价值的工具。

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