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Hidden Markov Model Analysis of Maternal Behavior Patterns in Inbred and Reciprocal Hybrid Mice

机译:自交和倒交杂交小鼠孕产妇行为模式的隐马尔可夫模型分析

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摘要

Individual variation in maternal care in mammals shows a significant heritable component, with the maternal behavior of daughters resembling that of their mothers. In laboratory mice, genetically distinct inbred strains show stable differences in maternal care during the first postnatal week. Moreover, cross fostering and reciprocal breeding studies demonstrate that differences in maternal care between inbred strains persist in the absence of genetic differences, demonstrating a non-genetic or epigenetic contribution to maternal behavior. In this study we applied a mathematical tool, called hidden Markov model (HMM), to analyze the behavior of female mice in the presence of their young. The frequency of several maternal behaviors in mice has been previously described, including nursing/grooming pups and tending to the nest. However, the ordering, clustering, and transitions between these behaviors have not been systematically described and thus a global description of maternal behavior is lacking. Here we used HMM to describe maternal behavior patterns in two genetically distinct mouse strains, C57BL/6 and BALB/c, and their genetically identical reciprocal hybrid female offspring. HMM analysis is a powerful tool to identify patterns of events that cluster in time and to determine transitions between these clusters, or hidden states. For the HMM analysis we defined seven states: arched-backed nursing, blanket nursing, licking/grooming pups, grooming, activity, eating, and sleeping. By quantifying the frequency, duration, composition, and transition probabilities of these states we were able to describe the pattern of maternal behavior in mouse and identify aspects of these patterns that are under genetic and nongenetic inheritance. Differences in these patterns observed in the experimental groups (inbred and hybrid females) were detected only after the application of HMM analysis whereas classical statistical methods and analyses were not able to highlight them.
机译:哺乳动物在孕产妇保健方面的个体差异显示出可遗传的重要组成部分,女儿的孕产妇行为与其母亲相似。在实验室小鼠中,遗传上不同的近交品系在产后第一周内在母体保健方面显示出稳定的差异。此外,交叉育种和对等育种研究表明,自交系之间在孕产妇保健方面的差异在没有遗传差异的情况下仍然存在,表明对母体行为的非遗传或表观遗传贡献。在这项研究中,我们应用了一种称为隐马尔可夫模型(HMM)的数学工具来分析雌性小鼠在幼年时的行为。先前已经描述了小鼠中几种孕产妇行为的频率,包括哺乳期/修饰幼犬和趋于产巢。但是,这些行为之间的顺序,聚类和转变尚未得到系统地描述,因此缺乏对孕产妇行为的整体描述。在这里,我们使用HMM来描述两种遗传上不同的小鼠品系C57BL / 6和BALB / c及其遗传上相同的雌雄杂交后代的母体行为模式。 HMM分析是一种功能强大的工具,它可以识别时间上聚类的事件的模式并确定这些聚类之间的转换或隐藏状态。对于HMM分析,我们定义了七个状态:拱形后备护理,毯子护理,舔/修饰幼仔,修饰,活动,饮食和睡眠。通过量化这些状态的频率,持续时间,组成和转移概率,我们能够描述小鼠的母性行为模式,并确定这些模式在遗传和非遗传继承下的各个方面。仅在应用HMM分析后,才能在实验组(近交和杂种雌性)中观察到这些模式的差异,而经典的统计方法和分析无法突出显示它们。

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