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Structural Identifiability of Systems Biology Models: A Critical Comparison of Methods

机译:系统生物学模型的结构可识别性:方法的关键比较

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摘要

Analysing the properties of a biological system through in silico experimentation requires a satisfactory mathematical representation of the system including accurate values of the model parameters. Fortunately, modern experimental techniques allow obtaining time-series data of appropriate quality which may then be used to estimate unknown parameters. However, in many cases, a subset of those parameters may not be uniquely estimated, independently of the experimental data available or the numerical techniques used for estimation. This lack of identifiability is related to the structure of the model, i.e. the system dynamics plus the observation function. Despite the interest in knowing a priori whether there is any chance of uniquely estimating all model unknown parameters, the structural identifiability analysis for general non-linear dynamic models is still an open question. There is no method amenable to every model, thus at some point we have to face the selection of one of the possibilities. This work presents a critical comparison of the currently available techniques. To this end, we perform the structural identifiability analysis of a collection of biological models. The results reveal that the generating series approach, in combination with identifiability tableaus, offers the most advantageous compromise among range of applicability, computational complexity and information provided.
机译:通过计算机模拟实验分析生物系统的特性需要对系统进行令人满意的数学表示,包括模型参数的准确值。幸运的是,现代实验技术可以获取适当质量的时间序列数据,然后可以将其用于估算未知参数。但是,在许多情况下,这些参数的子集可能不会独立于可用的实验数据或用于估算的数值技术而被唯一地估算。缺乏可识别性与模型的结构有关,即系统动力学加观察功能。尽管有兴趣先验地知道是否有可能唯一地估计所有模型未知参数,但是对于一般非线性动力学模型的结构可识别性分析仍然是一个悬而未决的问题。没有适用于每种模型的方法,因此在某些时候,我们必须面对一种可能性的选择。这项工作提出了当前可用技术的关键比较。为此,我们执行了一系列生物学模型的结构可识别性分析。结果表明,生成系列方法与可识别性表相结合,在适用范围,计算复杂性和提供的信息之间提供了最有利的折衷。

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