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The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability

机译:可扩展本体开发(XOD)原理和工具实现以支持本体互操作性

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摘要

Ontologies are critical to data/metadata and knowledge standardization, sharing, and analysis. With hundreds of biological and biomedical ontologies developed, it has become critical to ensure ontology interoperability and the usage of interoperable ontologies for standardized data representation and integration. The suite of web-based Ontoanimal tools (e.g., Ontofox, Ontorat, and Ontobee) support different aspects of extensible ontology development. By summarizing the common features of Ontoanimal and other similar tools, we identified and proposed an “eXtensible Ontology Development” (XOD) strategy and its associated four principles. These XOD principles reuse existing terms and semantic relations from reliable ontologies, develop and apply well-established ontology design patterns (ODPs), and involve community efforts to support new ontology development, promoting standardized and interoperable data and knowledge representation and integration. The adoption of the XOD strategy, together with robust XOD tool development, will greatly support ontology interoperability and robust ontology applications to support data to be Findable, Accessible, Interoperable and Reusable (i.e., FAIR).
机译:本体对于数据/元数据以及知识的标准化,共享和分析至关重要。随着数百种生物和生物医学本体的发展,确保本体的互操作性以及使用可互操作的本体进行标准化数据表示和集成变得至关重要。这套基于网络的Ontoanimal工具(例如Ontofox,Ontorat和Ontobee)支持可扩展本体开发的不同方面。通过总结本体动物和其他类似工具的共同特征,我们确定并提出了“可扩展本体开发”(XOD)策略及其相关的四个原则。这些XOD原则重用了可靠本体中的现有术语和语义关系,开发并应用了完善的本体设计模式(ODP),并参与了社区的努力以支持新的本体开发,促进标准化和可互操作的数据以及知识表示和集成。 XOD策略的采用以及健壮的XOD工具开发将极大地支持本体互操作性和健壮的本体应用程序,以支持可查找,可访问,可互操作和可重用(即FAIR)的数据。

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