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Evolvability and hierarchy in rewired bacterial gene networks

机译:重新连接的细菌基因网络中的进化能力和等级。

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摘要

Sequencing DNA from several organisms has revealed that duplication and drift of existing genes have primarily molded the contents of a given genome. Though the effect of knocking out or over-expressing a particular gene has been studied in many organisms, no study has systematically explored the effect of adding new links in a biological network. To explore network evolvability, we constructed 598 recombinations of promoters (including regulatory regions) with different transcription or σ-factor genes in Escherichia coli, added over a wild-type genetic background. Here we show that ~95% of new networks are tolerated by the bacteria, that very few alter growth, and that expression level correlates with factor position in the wild-type network hierarchy. Most importantly, we find that certain networks consistently survive over the wild-type under various selection pressures. Therefore new links in the network are rarely a barrier for evolution and can even confer a fitness advantage.
机译:对几种生物的DNA测序表明,现有基因的复制和漂移主要是塑造了给定基因组的内容。尽管已经在许多生物中研究了敲除或过度表达特定基因的作用,但是还没有系统地探索在生物网络中添加新链接的作用的研究。为了探索网络的可进化性,我们构建了598个在大肠杆菌中具有不同转录或σ因子基因的启动子(包括调控区)重组,并添加了野生型遗传背景。在这里,我们显示细菌可耐受约95%的新网络,几乎没有改变生长,并且表达水平与野生型网络层次中的因子位置相关。最重要的是,我们发现某些网络在各种选择压力下始终能够在野生型条件下生存。因此,网络中的新链接很少成为演进的障碍,甚至可以赋予健身优势。

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