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Multiscale Modeling of Four-component Lipid Mixtures: Domain Composition Size Alignment and Properties of the Phase Interface

机译:四组分脂质混合物的多尺度建模:域组成尺寸排列和相界面性质

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摘要

Simplified lipid mixtures are often used to model the complex behavior of the cell plasma membrane. Indeed, as few as four components — a high-melting lipid, a nandomain-inducing low-melting lipid, a macrodomain-inducing low-melting lipid and cholesterol (chol) — can give rise to a wide range of domain sizes and patterns that are highly sensitive to lipid compositions. Though these systems are studied extensively with experiments, the molecular-level details governing their phase behavior are not yet known. We address this issue by using molecular dynamics simulations to analyze how phase separation evolves in a four-component system as it transitions from small domains to large domains. To do so, we fix concentrations of the high-melting lipid 16:0,16:0-phosphatidylcholine (DPPC) and chol, and incrementally replace the nanodomain-inducing low-melting lipid 16:0,18:2-PC (PUPC) by the macrodomain-inducing low-melting lipid 18:2,18:2-PC (DUPC). Coarse-grained simulations of this four-component system reveal that lipid demixing increases as the amount of DUPC increases. Additionally, we find that domain size and interleaflet alignment change sharply over a narrow range of replacement of PUPC by DUPC, indicating that intraleaflet and interleaflet behaviors are coupled. Corresponding united atom simulations show that only lipids within ~ 2 nm of the phase interface are significantly perturbed regardless of domain composition or size. Thus, whereas the fraction of interface-perturbed lipids is negligible for large domains, it is significant for smaller ones. Together, these results reveal characteristic traits of bilayer thermodynamic behavior in four-component mixtures, and provide a baseline for investigation of the effects of proteins and other lipids on membrane phase properties.
机译:简化的脂质混合物通常用于模拟细胞质膜的复杂行为。实际上,只有四种成分(高熔点脂质,诱导南域的低熔点脂质,诱导大域的低熔点脂质和胆固醇(胆固醇))可产生范围广泛的域大小和模式,对脂质成分高度敏感。尽管通过实验对这些系统进行了广泛的研究,但控制它们的相行为的分子级细节尚不清楚。我们通过使用分子动力学模拟分析相分离在四组分系统中从小区域过渡到大区域的过程,从而解决了这个问题。为此,我们固定了高熔点脂质16:0,16:0-磷脂酰胆碱(DPPC)和胆固醇的浓度,并逐步替代了诱导纳米域的低熔点脂质16:0,18:2-PC(PUPC )诱导大结构域的低熔点脂质18:2,18:2-PC(DUPC)。该四组分系统的粗粒度模拟显示,脂质分散随着DUPC量的增加而增加。此外,我们发现域大小和小叶间排列在由DUPC取代PUPC的狭窄范围内急剧变化,表明小叶内和小叶间行为是耦合的。相应的联合原子模拟表明,无论结构域组成或大小如何,仅相界面〜2 nm内的脂质都会受到显着干扰。因此,尽管对于大域而言,界面扰动脂质的比例可以忽略不计,但对于较小域而言,这是很重要的。总之,这些结果揭示了四组分混合物中双层热力学行为的特征,并为研究蛋白质和其他脂质对膜相性质的影响提供了基线。

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