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A Newton Cooperative Genetic Algorithm Method for In Silico Optimization of Metabolic Pathway Production

机译:代谢途径生产的计算机优化的牛顿合作遗传算法

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摘要

This paper presents an in silico optimization method of metabolic pathway production. The metabolic pathway can be represented by a mathematical model known as the generalized mass action model, which leads to a complex nonlinear equations system. The optimization process becomes difficult when steady state and the constraints of the components in the metabolic pathway are involved. To deal with this situation, this paper presents an in silico optimization method, namely the Newton Cooperative Genetic Algorithm (NCGA). The NCGA used Newton method in dealing with the metabolic pathway, and then integrated genetic algorithm and cooperative co-evolutionary algorithm. The proposed method was experimentally applied on the benchmark metabolic pathways, and the results showed that the NCGA achieved better results compared to the existing methods.
机译:本文提出了一种代谢途径生产的计算机优化方法。代谢途径可以由称为广义质量作用模型的数学模型表示,这会导致复杂的非线性方程组。当涉及稳态和代谢途径中各组分的约束时,优化过程变得困难。针对这种情况,本文提出了一种计算机优化方法,即牛顿合作遗传算法(NCGA)。 NCGA采用牛顿法处理代谢途径,然后将遗传算法和协同协同进化算法相结合。将该方法实验性地应用于基准代谢途径,结果表明与现有方法相比,NCGA取得了更好的效果。

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