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Investigation of prevalence of free Shiga toxin-producing Escherichia coli (STEC)-specific bacteriophages and its correlation with STEC bacterial hosts in a produce-growing area in Salinas California

机译:在加利福尼亚州萨利纳斯市的一个农产品种植区对产生志贺毒素的免费大肠杆菌特异性细菌噬菌体的患病率及其与STEC细菌宿主的关系进行调查

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摘要

Shiga toxin-producing E. coli (STEC) causes approximately 265,000 illnesses and 3,600 hospitalizations annually and is highly associated with animal contamination due to the natural reservoir of ruminant gastrointestinal tracts. Free STEC-specific bacteriophages against STEC strains are also commonly isolated from fecal-contaminated environment. Previous studies have evaluated the correlation between the prevalence of STEC-specific bacteriophages and STEC strains to improve animal-associated environment. However, the similar information regarding free STEC-specific bacteriophages prevalence in produce growing area is lacking. Thus, the objectives of this research were to determine the prevalence of STEC-specific phages, analyze potential effects of environmental factors on the prevalence of the phages, and study correlations between STEC-specific bacteriophages and the bacterial hosts in pre-harvest produce environment. Surface water from 20 samples sites was subjected to free bacteriophage isolation using host strains of both generic E. coli and STEC (O157, six non-O157 and one O179 strains) cocktails, and isolation of O157 and non-O157 STEC strains by use of culture methods combined with PCR-based confirmation. The weather data were obtained from weather station website. Free O145- and O179-specific bacteriophages were the two most frequently isolated bacteriophages among all (O45, O145, O157 and O179) in this study. The results showed June and July had relatively high prevalence of overall STEC-specific bacteriophages with minimum isolation of STEC strains. In addition, the bacteriophages were likely isolated in the area—around or within city—with predominant human impact, whereas the STEC bacterial isolates were commonly found in agriculture impact environment. Furthermore, there was a trend that the sample sites with positive of free STEC bacteriophage did not have the specific STEC bacterial hosts. The findings of the study enable us to understand the ecology between free STEC-specific phages and STEC bacteria for further pre-harvest food safety management in produce environment.
机译:产生志贺毒素的大肠杆菌(STEC)每年导致大约265,000例疾病和3,600例住院治疗,并且由于反刍动物胃肠道的天然库藏,与动物污染高度相关。通常还从粪便污染的环境中分离出针对STEC菌株的游离STEC特异性噬菌体。先前的研究已经评估了STEC特异性噬菌体的流行与STEC菌株之间的相关性,以改善动物相关的环境。但是,缺乏有关农产品种植区中游离STEC特异性噬菌体流行的类似信息。因此,本研究的目的是确定STEC特异性噬菌体的流行率,分析环境因素对噬菌体流行性的潜在影响,并研究STEC特异性噬菌体与收获前生产环境中细菌宿主之间的相关性。使用通用大肠杆菌和STEC的宿主菌株(O157、6个非O157和1个O179菌株)混合物对来自20个样本位置的地表水进行游离噬菌体分离,并通过使用以下方法分离O157和非O157 STEC菌株培养方法结合基于PCR的确认。天气数据是从气象站网站获得的。在这项研究中,游离的O145和O179特异性噬菌体是所有细菌中最常见的两种(O45,O145,O157和O179)。结果表明,6月和7月总体STEC特异性噬菌体的患病率较高,而STEC菌株的分离却最少。另外,噬菌体很可能是在人为影响最严重的地区(城市附近或城市内)分离的,而STEC细菌分离株通常在农业影响环境中发现。此外,存在一种趋势,即带有游离STEC噬菌体阳性的样品位点没有特定的STEC细菌宿主。该研究的发现使我们能够了解游离STEC特异性噬菌体与STEC细菌之间的生态关系,以便在生产环境中进一步进行收获前食品安全管理。

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