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Brassica ASTRA: an integrated database for Brassica genomic research

机译:Brassica ASTRA:芸苔基因组研究的综合数据库

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摘要

Brassica ASTRA is a public database for genomic information on Brassica species. The database incorporates expressed sequences with Swiss-Prot and GenBank comparative sequence annotation as well as secondary Gene Ontology (GO) annotation derived from the comparison with Arabidopsis TAIR GO annotations. Simple sequence repeat molecular markers are identified within resident sequences and mapped onto the closely related Arabidopsis genome sequence. Bacterial artificial chromosome (BAC) end sequences derived from the Multinational Brassica Genome Project are also mapped onto the Arabidopsis genome sequence enabling users to identify candidate Brassica BACs corresponding to syntenic regions of Arabidopsis. This information is maintained in a MySQL database with a web interface providing the primary means of interrogation. The database is accessible at .
机译:芸苔属ASTRA是有关芸苔属物种基因组信息的公共数据库。该数据库整合了带有Swiss-Prot和GenBank比较序列注释的表达序列,以及通过与拟南芥属TAIR GO注释进行比较而得到的次级基因本体论(GO)注释。简单的序列重复分子标记在驻留序列中鉴定,并定位到紧密相关的拟南芥基因组序列上。来自多国芸苔属基因组计划的细菌人工染色体(BAC)末端序列也被映射到拟南芥基因组序列上,使用户能够识别与拟南芥同基因区相对应的候选芸苔属BAC。该信息在具有Web界面的MySQL数据库中维护,该Web界面提供了主要的查询手段。该数据库可从访问。

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