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Marine invasions enter the genomic era: three lessons from the past and the way forward

机译:海洋入侵进入基因组时代:过去的三个教训以及前进的方向

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摘要

The expanding scale and increasing rate of marine biological invasions have been documented since the early 20th century. Besides their global ecological and economic impacts, non-indigenous species (NIS) also have attracted much attention as opportunities to explore important eco-evolutionary processes such as rapid adaptation, long-distance dispersal and range expansion, and secondary contacts between divergent evolutionary lineages. In this context, genetic tools have been extensively used in the past 20 years. Three important issues appear to have emerged from such studies. First, the study of NIS has revealed unexpected cryptic diversity in what had previously been assumed homogeneous entities. Second, there has been surprisingly little evidence of strong founder events accompanying marine introductions, a pattern possibly driven by large propagule loads. Third, the evolutionary processes leading to successful invasion have been difficult to ascertain due to faint genetic signals. Here we explore the potential of novel tools associated with high-throughput sequencing (HTS) to address these still pressing issues. Dramatic increase in the number of loci accessible via HTS has the potential to radically increase the power of analyses aimed at species delineation, exploring the population genomic consequences of range expansions, and examining evolutionary processes such as admixture, introgression, and adaptation. Nevertheless, the value of this new wealth of genomic data will ultimately depend on the ability to couple it with expanded “traditional” efforts, including exhaustive sampling of marine populations over large geographic scales, integrated taxonomic analyses, and population level exploration of quantitative trait differentiation through common-garden and other laboratory experiments.
机译:自20世纪初以来,已有记录表明海洋生物入侵的规模不断扩大,速度不断加快。除了对全球生态和经济的影响外,非土著物种(NIS)还吸引了许多关注,因为它们有机会探索重要的生态进化过程,例如快速适应,远距离扩散和范围扩展以及不同进化谱系之间的次要联系。在这种情况下,遗传工具在过去的20年中被广泛使用。这些研究似乎出现了三个重要问题。首先,对NIS的研究揭示了以前被认为是同质实体的意外的密码学多样性。第二,几乎没有令人惊讶的证据表明伴随着海洋引进而发生的强大的创始人事件,这种模式可能是由大量繁殖体驱动的。第三,由于微弱的遗传信号,很难确定导致成功入侵的进化过程。在这里,我们探索与高通量测序(HTS)相关的新颖工具解决这些仍在紧迫的问题的潜力。通过HTS可访问的基因座数量的急剧增加,有可能从根本上增加针对物种划定,分析范围扩展的种群基因组后果以及研究进化过程(如混合,渗入和适应)的分析能力。然而,这些新的基因组数据财富的价值最终将取决于将其与扩展的“传统”研究相结合的能力,包括对大范围地理区域的海洋人口进行详尽的采样,综合的分类学分析以及对数量性状分化的种群水平探索。通过普通花园和其他实验室实验。

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