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Updated regulation curation model at the Saccharomyces Genome Database

机译:酿酒酵母基因组数据库中更新的法规管理模型

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摘要

The Saccharomyces Genome Database (SGD) provides comprehensive, integrated biological information for the budding yeast Saccharomyces cerevisiae, along with search and analysis tools to explore these data, enabling the discovery of functional relationships between sequence and gene products in fungi and higher organisms. We have recently expanded our data model for regulation curation to address regulation at the protein level in addition to transcription, and are presenting the expanded data on the ‘Regulation’ pages at SGD. These pages include a summary describing the context under which the regulator acts, manually curated and high-throughput annotations showing the regulatory relationships for that gene and a graphical visualization of its regulatory network and connected networks. For genes whose products regulate other genes or proteins, the Regulation page includes Gene Ontology enrichment analysis of the biological processes in which those targets participate. For DNA-binding transcription factors, we also provide other information relevant to their regulatory function, such as DNA binding site motifs and protein domains. As with other data types at SGD, all regulatory relationships and accompanying data are available through YeastMine, SGD’s data warehouse based on InterMine. >Database URL:
机译:酿酒酵母基因组数据库(SGD)为发芽酵母酿酒酵母提供了全面的,综合的生物学信息,并提供了搜索和分析工具来探索这些数据,从而能够发现真菌和高等生物中序列与基因产物之间的功能关系。我们最近扩展了用于调控管理的数据模型,以解决除转录外蛋白质水平的调控,并在SGD的“调控”页面上展示了扩展的数据。这些页面包括一个摘要,描述了调节剂作用的环境,手动策划和高通量注释,显示了该基因的调节关系,并以图形方式显示了其调节网络和连接网络。对于其产物调控其他基因或蛋白质的基因,“调控”页面包括这些靶标参与的生物过程的基因本体论富集分析。对于DNA结合转录因子,我们还提供了与其调节功能相关的其他信息,例如DNA结合位点基序和蛋白质结构域。与SGD中的其他数据类型一样,所有监管关系和随附数据都可以通过YeastMine获得,YeastMine是SGD基于InterMine的数据仓库。 >数据库网址

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