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Intrinsic noise and deviations from criticality in Boolean gene-regulatory networks

机译:布尔基因调控网络中的固有噪声和临界度偏差

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摘要

Gene regulatory networks can be successfully modeled as Boolean networks. A much discussed hypothesis says that such model networks reproduce empirical findings the best if they are tuned to operate at criticality, i.e. at the borderline between their ordered and disordered phases. Critical networks have been argued to lead to a number of functional advantages such as maximal dynamical range, maximal sensitivity to environmental changes, as well as to an excellent tradeoff between stability and flexibility. Here, we study the effect of noise within the context of Boolean networks trained to learn complex tasks under supervision. We verify that quasi-critical networks are the ones learning in the fastest possible way –even for asynchronous updating rules– and that the larger the task complexity the smaller the distance to criticality. On the other hand, when additional sources of intrinsic noise in the network states and/or in its wiring pattern are introduced, the optimally performing networks become clearly subcritical. These results suggest that in order to compensate for inherent stochasticity, regulatory and other type of biological networks might become subcritical rather than being critical, all the most if the task to be performed has limited complexity.
机译:基因调控网络可以成功地建模为布尔网络。一个经过广泛讨论的假设说,如果将这些模型网络调整为在临界条件下(即在其有序和无序阶段之间的边界)运行,则可以最好地再现经验发现。关键网络已被认为可以带来许多功能上的优势,例如最大的动态范围,对环境变化的最大敏感性以及在稳定性和灵活性之间的出色折衷。在这里,我们研究了在训练下学习复杂任务的布尔网络环境下噪声的影响。我们验证了准关键网络是以最快的方式学习的,即使对于异步更新规则也是如此,并且任务复杂性越大,关键性距离就越小。另一方面,当引入处于网络状态和/或处于其布线模式中的其他固有噪声源时,表现最佳的网络显然变得次临界。这些结果表明,为了补偿内在的随机性,监管和其他类型的生物网络可能会变得次临界而非关键,如果要执行的任务具有有限的复杂性,则将是最重要的。

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