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A fast and low-cost genotyping method for hepatitis B virus based on pattern recognition in point-of-care settings

机译:基于即时诊断模式识别的乙型肝炎病毒快速低成本基因分型方法

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摘要

A fast and low-cost method for HBV genotyping especially for genotypes A, B, C and D was developed and tested. A classifier was used to detect and analyze a one-step immunoassay lateral flow strip functionalized with genotype-specific monoclonal antibodies (mAbs) on multiple capture lines in the form of pattern recognition for point-of-care (POC) diagnostics. The fluorescent signals from the capture lines and the background of the strip were collected via multiple optical channels in parallel. A digital HBV genotyping model, whose inputs are the fluorescent signals and outputs are a group of genotype-specific digital binary codes (0/1), was developed based on the HBV genotyping strategy. Meanwhile, a companion decoding table was established to cover all possible pairing cases between the states of a group of genotype-specific digital binary codes and the HBV genotyping results. A logical analyzing module was constructed to process the detected signals in parallel without program control, and its outputs were used to drive a set of LED indicators, which determine the HBV genotype. Comparing to the nucleic acid analysis to HBV viruses, much faster HBV genotyping with significantly lower cost can be obtained with the developed method.
机译:开发并测试了一种快速低成本的HBV基因分型方法,尤其是针对A,B,C和D基因型的方法。使用分类器以模式识别的形式在多个捕获线上检测和分析以基因型特异性单克隆抗体(mAb)功能化的一步免疫测定侧向流动条,以进行即时医疗(POC)诊断。来自捕获线和条带背景的荧光信号通过多个平行的光学通道收集。基于HBV基因分型策略,开发了数字HBV基因分型模型,其输入是荧光信号,输出是一组特定基因型的数字二进制代码(0/1)。同时,建立了伴随解码表,以涵盖一组特定基因型数字二进制代码的状态与HBV基因分型结果之间的所有可能的配对情况。构建了逻辑分析模块,无需程序控制即可并行处理检测到的信号,其输出用于驱动一组确定HBV基因型的LED指示器。与针对HBV病毒的核酸分析相比,使用开发的方法可以获得更快的HBV基因分型,且成本更低。

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