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Label-free classification of neurons and glia in neural stem cell cultures using a hyperspectral imaging microscopy combined with machine learning

机译:使用高光谱成像显微镜结合机器学习对神经干细胞培养物中的神经元和神经胶质进行无标签分类

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摘要

Due to a growing demand for a viable label-free observation method in the biomedical field, many techniques, such as quantitative phase imaging and Raman spectroscopy, have been studied, and a complementary approach, hyperspectral imaging, has also been introduced. We developed a high-speed hyperspectral imaging microscopy imaging method with commercially available apparatus, employing a liquid crystal tunable bandpass filter combined with a pixel-wise machine learning classification. Next, we evaluated the feasibility of the application of this method for stem cell research utilizing neural stem cells. Employing this microscopy method, with a 562 × 562 μm2 field of view, 2048 × 2048 pixel resolution images containing 63 wavelength pixel-wise spectra could be obtained in 30 seconds. The neural stem cells were differentiated into neurons and astroglia (glia), and a four-class cell classification evaluation (including neuronal cell body, glial cell body, process and extracellular region) was conducted under co-cultured conditions. As a result, an average of 88% of the objects of interest were correctly classified, with an average precision of 94%, and more than 99% of the extracellular pixels were correctly segregated. These results indicated that the proposed hyperspectral imaging microscopy is feasible as a label-free observation method for stem cell research.
机译:由于在生物医学领域对可行的无标记观察方法的需求不断增长,已经研究了许多技术,例如定量相成像和拉曼光谱,并且还引入了补充方法高光谱成像。我们使用市场上可买到的设备开发了一种高速高光谱成像显微镜成像方法,该方法采用了液晶可调带通滤波器并结合了像素级机器学习分类。接下来,我们评估了该方法在利用神经干细胞进行干细胞研究中的可行性。使用这种显微镜方法,在562×562μm 2 视野下,可以在30 s内获得包含63个波长像素方向光谱的2048×2048像素分辨率图像。将神经干细胞分化为神经元和星形胶质细胞(胶质细胞),并在共培养条件下进行四类细胞分类评估(包括神经元细胞体,神经胶质细胞体,过程和细胞外区域)。结果,正确分类了平均88%的目标对象,平均精度为94%,并且正确分离了99%以上的细胞外像素。这些结果表明,提出的高光谱成像显微镜作为干细胞研究的无标记观察方法是可行的。

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