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Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes

机译:对抗生素抗性适应性景观的进化命运的延迟承诺

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摘要

Predicting evolutionary paths to antibiotic resistance is key for understanding and controlling drug resistance. When considering a single final resistant genotype, epistatic contingencies among mutations restricts evolution to a small number of adaptive paths. Less attention has been given to multi-peak landscapes, and while specific peaks can be favored, it is unknown whether and how early a commitment to final fate is made. Here we characterized a multi-peaked adaptive landscape for trimethoprim resistance by constructing all combinatorial alleles of seven resistance-conferring mutations in dihydrofolate reductase. We observe that epistatic interactions increase rather than decrease the accessibility of each peak; while they restrict the number of direct paths, they generate more indirect paths, where mutations are adaptively gained and later adaptively lost or changed. This enhanced accessibility allows evolution to proceed through many adaptive steps while delaying commitment to genotypic fate, hindering our ability to predict or control evolutionary outcomes.
机译:预测抗生素耐药性的进化途径是理解和控制耐药性的关键。当考虑单一的最终抗药性基因型时,突变之间的上位偶然性将进化限制为少量的适应性途径。对多峰景观的关注较少,虽然可以偏爱特定的高峰,但对于最终命运的承诺是否及及早做出,尚不清楚。在这里,我们通过构建二氢叶酸还原酶中七个具有抗药性的突变的所有组合等位基因,来表征甲氧苄啶抗性的多峰适应性景观。我们观察到上位相互作用增加而不是减少每个峰的可及性。尽管它们限制了直接路径的数量,但它们会生成更多的间接路径,在这些路径中,自适应地获得突变,后来自适应地丢失或改变。这种增强的可访问性允许进化过程通过许多适应性步骤进行,同时延缓了对基因型命运的承诺,从而阻碍了我们预测或控制进化结果的能力。

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