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Bayesian Calibration of Coarse-Grained Forces: Efficiently Addressing Transferability

机译:粗粒力的贝叶斯定标:有效解决传递性

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摘要

Generating and calibrating forces that are transferable across a range of state-points remains a challenging task in coarse-grained (CG) molecular dynamics (MD). In this work, we present a coarse-graining workflow, inspired by ideas from uncertainty quantification and numerical analysis, to address this problem. The key idea behind our approach is to introduce a Bayesian correction algorithm that uses functional derivatives of CG simulations to rapidly and inexpensively recalibrate initial estimates f0 of forces anchored by standard methods such as Force-Matching (FM). Taking density-temperature relationships as a running example, we demonstrate that this algorithm, in concert with various interpolation schemes, can be used to efficiently compute physically reasonable force curves on a fine grid of state-points. Importantly, we show that our work flow is robust to several choices available to the modeler, including the interpolation schemes and tools used to construct f0. In a related vein, we also demonstrate that our approach can speed up coarse-graining by reducing the number of atomistic simulations needed as inputs to standard methods for generating CG forces.
机译:生成和校准可在一系列状态点上传递的力仍然是粗粒度(CG)分子动力学(MD)的一项艰巨任务。在这项工作中,我们提出了一个粗粒度的工作流程,该工作流程的灵感来自于不确定性量化和数值分析的想法,旨在解决此问题。我们方法背后的关键思想是引入贝叶斯校正算法,该算法使用CG模拟的函数导数来快速且廉价地重新校准通过标准方法(例如力匹配(FM))锚定的力的初始估计f0。以密度-温度关系为例,我们证明了该算法与各种插值方案相结合,可用于在状态点的细网格上有效地计算物理上合理的力曲线。重要的是,我们证明了我们的工作流程对于建模者可以使用的几种选择都非常可靠,包括用于构造f0的插值方案和工具。在相关方面,我们还证明了我们的方法可以通过减少作为生成CG力的标准方法的输入所需的原子模拟的数量来加快粗粒度。

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