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Shortest Path Edit Distance for Enhancing UMLS Integration and Audit

机译:最短路径编辑距离可增强UMLS集成和审核

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摘要

Expansion of the UMLS is an important long-term research project. This paper proposes Shortest Path Edit Distance (SPED) as an algorithm for improving existing source-integration and auditing techniques. We use SPED as a string similarity measure for UMLS terms that are known to be synonyms because they are assigned to the same concept. We compare SPED with several other well known string matching algorithms using two UMLS samples as test bed. One of those samples is SNOMED-based. SPED transforms the task of calculating edit distance among two strings into a problem of finding a shortest path from a source to a destination in a node and link graph. In the algorithm, the two strings are used to construct the graph. The Pulling algorithm is applied to find a shortest path, which determines the string similarity value. SPED was superior for one of the data sets, with a precision of 0.6.
机译:UMLS的扩展是一项重要的长期研究项目。本文提出了最短路径编辑距离(SPED)作为一种改进现有源集成和审核技术的算法。我们将SPED用作UMLS术语的字符串相似性度量,这些术语被称为同义词,因为它们被分配给相同的概念。我们使用两个UMLS样本作为测试台,将SPED与其他几种知名的字符串匹配算法进行了比较。这些样本之一是基于SNOMED的。 SPED将计算两个字符串之间的编辑距离的任务转换为在节点和链接图中找到从源到目的地的最短路径的问题。在该算法中,两个字符串用于构造图。应用Pulling算法查找最短路径,该路径确定字符串相似度值。 SPED优于其中一组数据,精度为0.6。

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