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A Model of Extracellular Enzymes in Free-Living Microbes: Which Strategy Pays Off?

机译:自由生物中细胞外酶的模型:哪种策略能奏效?

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摘要

An initial modeling approach was applied to analyze how a single, nonmotile, free-living, heterotrophic bacterial cell may optimize the deployment of its extracellular enzymes. Free-living cells live in a dilute and complex substrate field, and to gain enough substrate, their extracellular enzymes must be utilized efficiently. The model revealed that surface-attached and free enzymes generate unique enzyme and substrate fields, and each deployment strategy has distinctive advantages. For a solitary cell, surface-attached enzymes are suggested to be the most cost-efficient strategy. This strategy entails potential substrates being reduced to very low concentrations. Free enzymes, on the other hand, generate a radically different substrate field, which suggests significant benefits for the strategy if free cells engage in social foraging or experience high substrate concentrations. Swimming has a slight positive effect for the attached-enzyme strategy, while the effect is negative for the free-enzyme strategy. The results of this study suggest that specific dissolved organic compounds in the ocean likely persist below a threshold concentration impervious to biological utilization. This could help explain the persistence and apparent refractory state of oceanic dissolved organic matter (DOM). Microbial extracellular enzyme strategies, therefore, have important implications for larger-scale processes, such as shaping the role of DOM in ocean carbon sequestration.
机译:最初的建模方法用于分析单个非运动,自由生活的异养细菌细胞如何优化其细胞外酶的部署。自由生活的细胞生活在稀疏而复杂的底物领域,为了获得足够的底物,必须有效利用其细胞外酶。该模型表明,表面附着和游离酶可产生独特的酶和底物场,并且每种部署策略均具有独特的优势。对于单细胞,表面附着的酶被认为是最具成本效益的策略。这种策略需要将潜在的底物降低到非常低的浓度。另一方面,游离酶产生根本不同的底物场,如果游离细胞参与社会觅食或经历高底物浓度,则表明该策略具有显着优势。游泳对附着酶策略有轻微的积极影响,而对游离酶策略则不利。这项研究的结果表明,海洋中特定的溶解性有机化合物可能会持续低于生物利用不可渗透的阈值浓度。这可能有助于解释海洋溶解性有机物(DOM)的持久性和表观耐火状态。因此,微生物细胞外酶策略对大规模过程具有重要意义,例如塑造DOM在海洋碳固存中的作用。

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