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Convolutional neural networks for whole slide image superresolution

机译:卷积神经网络用于全幻灯片图像超分辨率

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摘要

We present a computational approach for improving the quality of the resolution of images acquired from commonly available low magnification commercial slide scanners. Images from such scanners can be acquired cheaply and are efficient in terms of storage and data transfer. However, they are generally of poorer quality than images from high-resolution scanners and microscopes and do not have the necessary resolution needed in diagnostic or clinical environments, and hence are not used in such settings. The driving question of this presented research is whether the resolution of these images could be enhanced such that it would serve the same diagnostic purpose as high-resolution images from expensive scanners or microscopes. This need is generally known as the image super-resolution (SR) problem in image processing, and it has been studied extensively. Even so, none of the existing methods directly work for the slide scanner images, due to the unique challenges posed by this modality. Here, we propose a convolutional neural network (CNN) based approach, which is specifically trained to take low-resolution slide scanner images of cancer data and convert it into a high-resolution image. We validate these resolution improvements with computational analysis to show the enhanced images offer the same quantitative results. In summary, our extensive experiments demonstrate that this method indeed produces images that are similar to images from high-resolution scanners, both in quality and quantitative measures. This approach opens up new application possibilities for using low-resolution scanners, not only in terms of cost but also in access and speed of scanning for both research and possible clinical use.
机译:我们提出一种计算方法,以提高从常用的低倍率商业载玻片扫描仪获得的图像的分辨率的质量。可以廉价地获取来自此类扫描仪的图像,并且在存储和数据传输方面非常有效。但是,它们的质量通常比高分辨率扫描仪和显微镜的图像差,并且没有诊断或临床环境所需的必要分辨率,因此不能在这种环境下使用。这项提出的研究的主要问题是,是否可以提高这些图像的分辨率,使其具有与昂贵的扫描仪或显微镜提供的高分辨率图像相同的诊断目的。这种需求通常被称为图像处理中的图像超分辨率(SR)问题,并且已经进行了广泛的研究。即使这样,由于这种方式带来的独特挑战,现有方法也无法直接用于幻灯片扫描仪图像。在这里,我们提出一种基于卷积神经网络(CNN)的方法,该方法经过专门培训,可以获取癌症数据的低分辨率幻灯片扫描仪图像并将其转换为高分辨率图像。我们通过计算分析验证了这些分辨率的提高,以显示增强的图像提供了相同的定量结果。总而言之,我们的大量实验表明,该方法的确在质量和定量方面都产生了与高分辨率扫描仪的图像相似的图像。这种方法为使用低分辨率扫描仪开辟了新的应用可能性,不仅在成本方面,而且在研究和可能的临床使用方面,在扫描的访问和速度方面也是如此。

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