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Morphological analysis of optical coherence tomography images for automated classification of gastrointestinal tissues

机译:光学相干断层扫描图像的形态分析用于胃肠道组织的自动分类

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摘要

The impact of digestive diseases, which include disorders affecting the oropharynx and alimentary canal, ranges from the inconvenience of a transient diarrhoea to dreaded conditions such as pancreatic cancer, which are usually fatal. Currently, the major limitation for the diagnosis of such diseases is sampling error because, even in the cases of rigorous adherence to biopsy protocols, only a tiny fraction of the surface of the involved gastrointestinal tract is sampled. Optical coherence tomography (OCT), which is an interferometric imaging technique for the minimally invasive measurement of biological samples, could decrease sampling error, increase yield, and even eliminate the need for tissue sampling provided that an automated, quick and reproducible tissue classification system is developed. Segmentation and quantification of ophthalmologic pathologies using OCT traditionally rely on the extraction of thickness and size measures from the OCT images, but layers are often not observed in nonopthalmic OCT imaging. Distinct mathematical methods, namely Principal Component Analysis (PCA) and textural analyses including both spatial textural analysis derived from the two-dimensional discrete Fourier transform (DFT) and statistical texture analysis obtained independently from center-symmetric autocorrelation (CSAC) and spatial grey-level dependency matrices (SGLDM), have been previously reported to overcome this problem. We propose an alternative approach consisting of a region segmentation according to the intensity variation along the vertical axis and a pure statistical technique for feature quantification, i.e. morphological analysis. Qualitative and quantitative comparisons with traditional approaches are accomplished in the discrimination of freshly-excised specimens of gastrointestinal tissues to exhibit the feasibility of the proposed method for computer-aided diagnosis (CAD) in the clinical setting.
机译:消化系统疾病(包括影响口咽和消化道疾病的影响)的范围从暂时性腹泻的不便到可怕的疾病,例如胰腺癌,通常是致命的。当前,诊断此类疾病的主要限制是采样误差,因为即使在严格遵守活检规程的情况下,也仅采样了胃肠道表面的一小部分。光学相干断层扫描(OCT)是一种用于生物样品微创测量的干涉成像技术,可以减少采样误差,提高产量,甚至消除对组织采样的需求,前提是要使用自动,快速且可重现的组织分类系统发达。传统上,使用OCT进行眼科病理学的分割和量化依赖于从OCT图像中提取厚度和尺寸测量值,但是在非眼科OCT成像中通常不会观察到层。不同的数学方法,即主成分分析(PCA)和纹理分析,包括从二维离散傅里叶变换(DFT)导出的空间纹理分析和独立于中心对称自相关(CSAC)和空间灰度的统计纹理分析依赖矩阵(SGLDM),以前已被报告以克服此问题。我们提出了一种替代方法,包括根据沿垂直轴的强度变化进行区域分割以及用于特征量化的纯统计技术,即形态分析。与传统方法的定性和定量比较是在对新鲜切除的胃肠组织标本的鉴别中完成的,从而证明了在临床环境中所提出的计算机辅助诊断(CAD)方法的可行性。

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