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Thermal fluctuations of haemoglobin from different species: adaptation to temperature via conformational dynamics

机译:不同物种血红蛋白的热涨落:通过构象动力学适应温度

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摘要

Thermodynamic stability, configurational motions and internal forces of haemoglobin (Hb) of three endotherms (platypus, Ornithorhynchus anatinus; domestic chicken, Gallus gallus domesticus and human, Homo sapiens) and an ectotherm (salt water crocodile, Crocodylus porosus) were investigated using circular dichroism, incoherent elastic neutron scattering and coarse-grained Brownian dynamics simulations. The experimental results from Hb solutions revealed a direct correlation between protein resilience, melting temperature and average body temperature of the different species on the 0.1 ns time scale. Molecular forces appeared to be adapted to permit conformational fluctuations with a root mean square displacement close to 1.2 Å at the corresponding average body temperature of the endotherms. Strong forces within crocodile Hb maintain the amplitudes of motion within a narrow limit over the entire temperature range in which the animal lives. In fully hydrated powder samples of human and chicken, Hb mean square displacements and effective force constants on the 1 ns time scale showed no differences over the whole temperature range from 10 to 300 K, in contrast to the solution case. A complementary result of the study, therefore, is that one hydration layer is not sufficient to activate all conformational fluctuations of Hb in the pico- to nanosecond time scale which might be relevant for biological function. Coarse-grained Brownian dynamics simulations permitted to explore residue-specific effects. They indicated that temperature sensing of human and chicken Hb occurs mainly at residues lining internal cavities in the β-subunits.
机译:使用圆二色性研究了三个吸热(鸭嘴兽,Ornithorhynchus anatinus;家禽,鸡背鸡和人,智人)和一个外温(盐水鳄鱼,Crocodys porosus)的热力学稳定性,构型运动和血红蛋白(Hb)的内力。 ,非相干弹性中子散射和粗粒度布朗动力学模拟。 Hb溶液的实验结果表明,在0.1 ns的时间尺度上,不同物种的蛋白质弹性,解链温度和平均体温之间存在直接关系。分子力似乎适合于允许构象波动,在相应的平均吸热体温下,均方根位移接近1.2。鳄鱼Hb内的强大力将运动幅度在动物生存的整个温度范围内保持在狭窄的范围内。与溶液情况相反,在人和鸡的完全水合粉末样品中,Hb均方位移和1 ns时间刻度上的有效力常数在10至300 K的整个温度范围内均未显示差异。因此,这项研究的补充结果是,一个水合层不足以激活皮秒级至纳秒级的Hb的所有构象波动,这可能与生物学功能有关。粗粒度布朗动力学模拟允许探索残基特异性效应。他们指出,人和鸡Hb的温度感测主要发生在β亚基内腔内衬的残基上。

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