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Application of PCR-Based Tools to Explore Strongyloides Infection in People in Parts of Northern Australia

机译:基于PCR的工具在北澳大利亚部分地区的人群中发现类线虫感染的应用

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摘要

Strongyloidiasis, which is caused by infection with the nematode Strongyloides stercoralis, is endemic to areas of northern Australia. Diagnosis in this region remains difficult due to the distances between endemic communities and diagnostic laboratories, leading to lengthy delays in stool processing for microscopy and culture. PCR represents a viable solution to this difficulty, having potential for high sensitivity detection of S. stercoralis, even in older, unpreserved faecal samples. We prospectively collected 695 faecal specimens that were submitted to The Townsville Hospital Microbiology Laboratory from the North Queensland region for routine parasitological examination, and subjected them to a Strongyloides sp. real-time (q)PCR. Results were confirmed with a novel nested conventional PCR assay targeting the 18S rRNA gene, followed by single-strand conformation polymorphism analysis (SSCP). Of the 695 specimens tested, S. stercoralis was detected in three specimens (0.4%) by classical parasitological methods (direct microscopy and formyl-ether acetate concentration), whereas 42 positives were detected by qPCR (6.0%). Conventional PCR confirmed the real-time PCR results in 24 of the samples (3.5%). Several apparent false-positive results occurred at higher cycle times (Ct) in the qPCR. Use of real-time PCR in these populations is promising for the enhanced detection of disease and to support eradication efforts.
机译:由线虫类固线虫感染引起的圆线虫病是澳大利亚北部地区的地方病。由于地方性社区和诊断实验室之间的距离,该地区的诊断仍然很困难,从而导致大便处理的长时间延迟,无法进行显微镜和培养。 PCR代表了解决此难题的一种可行解决方案,即使在较旧的未保存粪便样品中,也有可能以高灵敏度检测到甾体链球菌。我们前瞻性地收集了695份粪便标本,这些标本已从北昆士兰州地区提交给Townsville医院微生物学实验室进行常规寄生虫学检查,并经过了Strongyloides sp。处理。实时(q)PCR。通过针对18S rRNA基因的新型嵌套式常规PCR测定法,随后的单链构象多态性分析(SSCP),证实了结果。在测试的695个标本中,通过经典的寄生虫学方法(直接显微镜检查和甲酰醚乙酸盐浓度)在3个标本中检出了S. stercoralis(0.4%),而qPCR检测到42个阳性(6.0%)。传统PCR证实了24个样品(3.5%)中的实时PCR结果。在qPCR中,较高的循环时间(Ct)出现了一些明显的假阳性结果。在这些人群中使用实时PCR有望增强疾病的检测和支持根除工作。

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