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Predicting early psychiatric readmission with natural language processing of narrative discharge summaries

机译:通过叙述性出院摘要的自然语言处理来预测早期的精神病再入院

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摘要

The ability to predict psychiatric readmission would facilitate the development of interventions to reduce this risk, a major driver of psychiatric health-care costs. The symptoms or characteristics of illness course necessary to develop reliable predictors are not available in coded billing data, but may be present in narrative electronic health record (EHR) discharge summaries. We identified a cohort of individuals admitted to a psychiatric inpatient unit between 1994 and 2012 with a principal diagnosis of major depressive disorder, and extracted inpatient psychiatric discharge narrative notes. Using these data, we trained a 75-topic Latent Dirichlet Allocation (LDA) model, a form of natural language processing, which identifies groups of words associated with topics discussed in a document collection. The cohort was randomly split to derive a training (70%) and testing (30%) data set, and we trained separate support vector machine models for baseline clinical features alone, baseline features plus common individual words and the above plus topics identified from the 75-topic LDA model. Of 4687 patients with inpatient discharge summaries, 470 were readmitted within 30 days. The 75-topic LDA model included topics linked to psychiatric symptoms (suicide, severe depression, anxiety, trauma, eating/weight and panic) and major depressive disorder comorbidities (infection, postpartum, brain tumor, diarrhea and pulmonary disease). By including LDA topics, prediction of readmission, as measured by area under receiver-operating characteristic curves in the testing data set, was improved from baseline (area under the curve 0.618) to baseline+1000 words (0.682) to baseline+75 topics (0.784). Inclusion of topics derived from narrative notes allows more accurate discrimination of individuals at high risk for psychiatric readmission in this cohort. Topic modeling and related approaches offer the potential to improve prediction using EHRs, if generalizability can be established in other clinical cohorts.
机译:预测精神病再入院的能力将有助于制定减少这种风险的干预措施,而这是精神病医疗费用的主要驱动力。开发可靠的预测因素所必需的疾病过程的症状或特征在编码的账单数据中不可用,但可能会出现在叙述性电子健康记录(EHR)排放摘要中。我们确定了1994年至2012年之间入院的精神病住院患者的主要队列,主要诊断为重度抑郁症,并提取了住院患者的精神病学叙事记录。使用这些数据,我们训练了75个主题的潜在狄利克雷分配(LDA)模型,这是自然语言处理的一种形式,它可以识别与文档集中讨论的主题相关的单词组。将该队列随机分组以得出训练(70%)和测试(30%)数据集,我们针对单独的基线临床特征,基线特征加上常见的单个单词以及上述内容以及从75个主题的LDA模型。在4687名住院病人出院摘要中,有470名在30天内被重新录入。 75个主题的LDA模型包括与精神症状(自杀,严重抑郁,焦虑,创伤,饮食/体重和恐慌)和主要的抑郁症合并症(感染,产后,脑肿瘤,腹泻和肺部疾病)相关的主题。通过包含LDA主题,重新测试的预测(从测试数据集中接收者操作特征曲线下的区域测量)从基线(曲线下面积0.618)提高到基线+1000字(0.682)到基线+75主题( 0.784)。纳入从叙事笔记中得出的主题,可以更准确地区分此队列中精神病患者再次入院的高风险人群。如果可以在其他临床队列中建立通用性,则主题建模和相关方法可能会改善使用EHR的预测的潜力。

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