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High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1

机译:新型植酸酶微生物Pantoea sp。的高质量基因组草图序列。 3.5.1

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摘要

Strain 3.5.1 was isolated from soils of the Republic of Tatarstan, Russia, on the basis of presence of a high phytate-degrading activity. Strains with such activities attract special interest because of its potential use as feed additives and natural manures. Strain 3.5.1 harbors a 99 % 16S rRNA nucleotide sequence similarity to different Pantoea species (P. vagans, P. ananatis, P. agglomerans, P. anthophila and Pantoea sp.) and exhibits unique biochemical properties that do not allow strain identification up to species. Moreover, the strain 3.5.1 shows a low ANI and MALDI-TOF Mass Spectrometry scores. Thus, it is likely that the strain 3.5.1 represents a new Pantoea species. Here, we present the genome sequence of Pantoea sp. strain 3.5.1. The 4,964,649 bp draft genome consists of 23 contigs with 4,556 protein-coding and 143 RNA genes. Genome sequencing and annotation revealed two phytase genes and putative regulatory genes controlling its activity.Electronic supplementary materialThe online version of this article (doi:10.1186/s40793-015-0093-y) contains supplementary material, which is available to authorized users.
机译:由于存在高的植酸盐降解活性,从俄罗斯of斯坦共和国的土壤中分离出菌株3.5.1。具有这种活性的菌株因其潜在地用作饲料添加剂和天然肥料而引起了特别的兴趣。菌株3.5.1与不同泛亚种(P. vagans,P。ananatis,P。agglomerans,P。anthophila和Pantoea sp。)具有99%的16S rRNA核苷酸序列相似性,并且表现出独特的生化特性,无法鉴定出菌株。种。此外,菌株3.5.1显示出较低的ANI和MALDI-TOF质谱得分。因此,菌株3.5.1可能代表了一个新的泛菌种。在这里,我们介绍了泛菌的基因组序列。应变3.5.1。 4,964,649 bp的草案基因组包含23个重叠群,具有4,556个蛋白质编码和143个RNA基因。基因组测序和注释揭示了两个植酸酶基因和推定的调控基因来控制其活性。电子补充材料本文的在线版本(doi:10.1186 / s40793-015-0093-y)包含补充材料,授权用户可以使用。

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