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Bypassing the kinetic trap of serpin protein folding by loop extension.

机译:通过环延伸绕过丝氨酸蛋白酶抑制剂蛋白折叠的动力学陷阱。

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摘要

The native form of some proteins such as strained plasma serpins (serine protease inhibitors) and the spring-loaded viral membrane fusion proteins are in a metastable state. The metastable native form is thought to be a folding intermediate in which conversion into the most stable state is blocked by a very high kinetic barrier. In an effort to understand how the spontaneous conversion of the metastable native form into the most stable state is prevented, we designed mutations of alpha1-antitrypsin, a prototype serpin, which can bypass the folding barrier. Extending the reactive center loop of alpha1-antitrypsin converts the molecule into a more stable state. Remarkably, a 30-residue loop extension allows conversion into an extremely stable state, which is comparable to the relaxed cleaved form. Biochemical data strongly suggest that the strain release is due to the insertion of the reactive center loop into the major beta-sheet, A sheet, as in the known stable conformations of serpins. Our results clearly show that extending the reactive center loop is sufficient to bypass the folding barrier of alpha1-antitrypsin and suggest that the constrain held by polypeptide connection prevents the conversion of the native form into the lowest energy state.
机译:一些蛋白质的天然形式,例如应变血浆丝氨酸蛋白酶抑制剂(丝氨酸蛋白酶抑制剂)和弹簧加载的病毒膜融合蛋白处于亚稳态。亚稳态天然形式被认为是折叠中间体,其中通过非常高的动力学屏障阻止转化为最稳定状态。为了了解如何防止亚稳态天然形式自发转化为最稳定状态,我们设计了α1-抗胰蛋白酶(一种原型丝氨酸蛋白酶抑制剂)的突变,该突变可以绕过折叠屏障。扩展α1-抗胰蛋白酶的反应性中心环可将分子转化为更稳定的状态。值得注意的是,残基扩展了30个残基,可以转化为极为稳定的状态,这与松弛的裂解形式相当。生化数据强烈表明菌株释放是由于将反应性中心环插入到主要的β-折叠片A片中,如丝氨酸蛋白酶抑制剂的已知稳定构象。我们的结果清楚地表明,扩展反应性中心环足以绕过α1-抗胰蛋白酶的折叠屏障,并表明多肽连接所保持的约束阻止了天然形式转化为最低能态。

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