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Effect of denaturant and protein concentrations upon protein refolding and aggregation: a simple lattice model.

机译:变性剂和蛋白质浓度对蛋白质复性和聚集的影响:简单的晶格模型。

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摘要

We present a study of the competition between protein refolding and aggregation for simple lattice model proteins. The effect of solvent conditions (i.e., the denaturant concentration and the protein concentration) on the folding and aggregation behavior of a system of simple, two-dimensional lattice protein molecules has been investigated via (dynamic Monte Carlo simulations. The population profiles and aggregation propensities of the nine most populated intermediate configurations exhibit a complex dependence on the solution conditions that can be understood by considering the competition between intra- and interchain interactions. Some of these configurations are not even seen in isolated chain simulations; they are observed to be highly aggregation prone and are stabilized primarily by the aggregation reaction in multiple-chain systems. Aggregation arises from the association of partially folded intermediates rather than from the association of denatured random-coil states. The aggregation reaction dominates over the folding reaction at high protein concentration and low denaturant concentration, resulting in low refolding yields at those conditions. However, optimum folding conditions exist at which the refolding yield is a maximum, in agreement with some experimental observations.
机译:我们目前对简单的晶格模型蛋白的蛋白折叠和聚集之间的竞争进行研究。通过(动态蒙特卡洛模拟)研究了溶剂条件(即变性剂浓度和蛋白质浓度)对简单的二维晶格蛋白质分子系统折叠和聚集行为的影响。人口最多的九种中间构型中,对溶液条件的依赖性很复杂,可以通过考虑链内和链间相互作用的竞争来理解,其中一些构型甚至在孤立链模拟中甚至看不到;它们被高度聚合。容易发生并主要通过多链系统中的聚集反应来稳定,聚集是由部分折叠的中间体的缔合而不是变性的无规卷曲状态的缔合引起的,在高蛋白浓度和低蛋白质浓度下,聚集反应在折叠反应中占主导地位变性剂浓度n,在这些条件下导致较低的重折叠产量。然而,与一些实验观察结果一致,存在最佳折叠条件,在该条件下重折叠产量最大。

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