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Clusters of calcium release channels harness the Ising phase transition to confine their elementary intracellular signals

机译:钙释放通道簇利用Ising相变限制其基本的细胞内信号

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摘要

Intracellular Ca signals represent a universal mechanism of cell function. Messages carried by Ca are local, rapid, and powerful enough to be delivered over the thermal noise. A higher signal-to-noise ratio is achieved by a cooperative action of Ca release channels such as IP3 receptors or ryanodine receptors arranged in clusters (release units) containing a few to several hundred release channels. The channels synchronize their openings via Ca-induced Ca release, generating high-amplitude local Ca signals known as puffs in neurons and sparks in muscle cells. Despite the positive feedback nature of the activation, Ca signals are strictly confined in time and space by an unexplained termination mechanism. Here we show that the collective transition of release channels from an open to a closed state is identical to the phase transition associated with the reversal of magnetic field in an Ising ferromagnet. Our simple quantitative criterion closely predicts the Ca store depletion level required for spark termination for each cluster size. We further formulate exact requirements that a cluster of release channels should satisfy in any cell type for our mapping to the Ising model and the associated formula to remain valid. Thus, we describe deterministically the behavior of a system on a coarser scale (release unit) that is random on a finer scale (release channels), bridging the gap between scales. Our results provide exact mapping of a nanoscale biological signaling model to an interacting particle system in statistical physics, making the extensive mathematical apparatus available to quantitative biology.
机译:细胞内Ca信号代表细胞功能的普遍机制。 Ca承载的消息是本地的,快速的且功能强大的,足以通过热噪声传递。通过Ca释放通道(例如IP3受体或ryanodine受体)的Ca释放通道的协同作用,可以实现更高的信噪比,这些簇排列在包含几百到几百个释放通道的簇(释放单元)中。这些通道通过Ca诱导的Ca释放来同步其开口,从而产生高幅度的局部Ca信号,这些信号被称为神经元粉扑和肌肉细胞中的火花。尽管激活具有积极的反馈性质,但Ca信号受到无法解释的终止机制的严格限制在时间和空间上。在这里,我们显示释放通道从打开状态到关闭状态的集体过渡与伊辛铁磁体中与磁场反转相关的相变相同。我们的简单定量标准可以紧密预测每个簇尺寸火花终止所需的Ca储存耗竭水平。我们进一步制定了确切的要求,即对于我们到伊辛模型的映射,释放通道的群集在任何单元格类型中都应满足,并且相关的公式仍然有效。因此,我们确定性地描述了系统在较粗规模(释放单元)上的行为,该行为在较细规模(释放通道)上是随机的,弥合了规模之间的差距。我们的结果提供了统计物理学中纳米尺度生物信号模型到相互作用粒子系统的精确映射,从而使大量的数学仪器可用于定量生物学。

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