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Dynamics of a small globular protein in terms of low-frequency vibrational modes.

机译:小球状蛋白在低频振动模式下的动力学。

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摘要

Normal modes of low-frequency vibrations are calculated for a small globular protein, bovine pancreatic trypsin inhibitor. In modes with frequencies below 120 cm-1 the protein molecule behaves like a continuous elastic body. Most modes with frequencies above 50 cm-1 are shown to behave harmonically within the range of thermal fluctuations at room temperature. Those with frequencies below 50 cm-1 show some anharmonicity. Magnitudes of displacements of atoms are mainly determined by the modes with frequencies below 30 cm-1. These very-low-frequency modes contribute significantly to the entropy of the system. The dynamic structure of the globular protein is described as a superposition of harmonic high-frequency motions and coupled anharmonic low-frequency motions of collective variables corresponding to the normal modes of vibration.
机译:对于小球状蛋白,牛胰胰蛋白酶抑制剂,可以计算出正常的低频振动模式。在频率低于120 cm-1的模式中,蛋白质分子的行为就像连续的弹性体。多数频率高于50 cm-1的模式在室温下在热波动范围内表现出谐波行为。频率低于50 cm-1的扬声器显示出一些非谐性。原子位移的幅度主要由频率低于30 cm-1的模式决定。这些非常低频的模式极大地促进了系统的熵。球状蛋白的动态结构被描述为谐波的高频运动与对应于正常振动模式的集体变量的耦合的非谐低频运动的叠加。

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