首页> 美国卫生研究院文献>Acta Crystallographica Section E: Crystallographic Communications >A new structural model for NiFe hydrogenases: an unsaturated analogue of a classic hydrogenase model leads to more enzyme-like Ni—Fe distance and inter­planar fold
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A new structural model for NiFe hydrogenases: an unsaturated analogue of a classic hydrogenase model leads to more enzyme-like Ni—Fe distance and inter­planar fold

机译:NiFe氢化酶的新结构模型:经典氢化酶模型的不饱和类似物导致更多的酶样Ni-Fe距离和平面间折叠

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摘要

The complex cation in the title compound, (carbonyl-1κC)(1η5-penta­methyl­cyclo­penta­dien­yl)(μ-2,3,9,10-tetra­methyl-1,4,8,11-tetra­thia­undeca-2,9-diene-1,11-diido-1κ2 S,S′′′:2κ4 S,S′,S′′,S′′′)ironnickel(Fe—Ni) hexa­fluoro­phosphate, [FeNi(C10H15)(C11H18S4)(CO)]PF6 or [Ni(L′)FeCp*(CO)]PF6, is composed of the nickel complex fragment [Ni(L′)] coordinated as a metalloligand (using S1 and S4) to the [FeCp*(CO)]+ fragment, where (L′)2− is [S—C(Me)=C(Me)—S—(CH2)3—S—C(Me)=C(Me)—S]2− and where Cp* is cyclo-C5(Me)5 (penta­methyl­cyclo­penta­dien­yl). The ratio of hexa­fluoro­phosphate anion per complex cation is 1:1. The structure at 150 K has ortho­rhom­bic (Pbcn) symmetry. The atoms of the complex cation are located on general positions (multiplicity = 8), whereas there are two independent hexa­fluoro­phosphate anions, each located on a twofold axis (Wyckoff position 4c; multiplicity = 4). The structure of the new dimetallic cation [Ni(L′)FeCp*(CO)]+ can be described as containing a three-legged piano-stool environment for iron [Cp*Fe(CO)‘S2’] and an approximately square-planar ‘S4’ environment for Ni. The NiS2Fe diamond-shaped substructure is notably folded at the S—S hinge: the angle between the NiS2 plane and the FeS2 plane normals is 64.85 (6)°. Largely because of this fold, the nickel–iron distance is relatively short, at 2.9195 (8) Å. The structural data for the complex cation, which contains a new unsaturated ‘S4’ ligand (two C=C double bonds), provide an inter­esting comparison with the known NiFe hydrogenase models containing a saturated ‘S4’-ligand analogue having the same number of carbon atoms in the ligand backbone, namely with the structures of [Ni(L)FeCp(CO)]+ (as the PF6 salt, CH2Cl2 solvate) and [Ni(L)FeCp*(CO)]+ (as the PF6 salt), where (L)2− is [S—CH2—CH2—S—(CH2)3—S—CH2—CH2—S]2− and Cp is cyclo­penta­dienyl. The saturated analogues [Ni(L)FeCp(CO)]+ and [Ni(L)FeCp*(CO)]+ have similar Ni—Fe distances: 3.1727 (6), 3.1529 (7) Å (two independent mol­ecules in the unit cell) and 3.111 (5) Å, respectively, for the two complexes, whereas [Ni(L′)FeCp*(CO)]+ described here stands out with a much shorter Ni—Fe distance [2.9196 (8) Å]. Also, [Ni(L)FeCp(CO)]+ and [Ni(L)FeCp*(CO)]+ show inter­planar fold angles that are similar between the two: 39.56 (5), 41.99 (5) (independent mol­ecules in the unit cell) and 47.22 (9) °, respectively, whereas [Ni(L′)FeCp*(CO)]+ possesses a much more pronounced fold [64.85 (6)°]. Given that larger fold angles and shorter Ni—Fe distances are considered to be structurally closer to the enzyme, unsaturation in an ‘S4’-ligand of the type (S—C2—S—C3—S—C2—S)2− seems to increase structural resemblance to the enzyme for structural models of the type [Ni(‘S4’)FeCpR(CO)]+ (CpR = Cp or Cp*).
机译:标题化合物(羰基-1κC)(1η 5 -五甲基环戊二烯基)(μ-2,3,9,10-四甲基-1,4,8,11-tetrathiaundeca-2)中的复合阳离子,9-diene-1,11-diido-1κ 2 S,S''':2κ 4 S,S',S'',S''')六氟磷酸铁镍(Fe-Ni)[FeNi(C10H15)(C11H18S4)(CO)] PF6或[Ni(L')FeCp *(CO)] PF6由镍络合物片段[Ni(L')]组成作为金属配体(使用S 1 和S 4 )与[FeCp *(CO)] + 片段配位,其中(L') 2-是[SC(Me)= C(Me)-S-(CH2)3-SC(Me)= C(Me)-S] 2- < / sup>,其中Cp * -是环C5(Me)5 -(五甲基环戊二烯基)。每个络合阳离子中六氟氟磷酸根阴离子的比例为1:1。 150 K处的结构具有正交性(Pbcn)对称性。络合阳离子的原子位于一般位置(多重性= 8),而有两个独立的六氟氟磷酸根阴离子,每个阴离子位于一个双倍轴上(Wyckoff位置4c;多重性= 4)。新的双金属阳离子[Ni(L')FeCp *(CO)] + 的结构可以描述为包含铁[Cp * Fe(CO)'的三足钢琴凳环境。 S2']和Ni的近似正方形平面“ S4”环境。 NiS2Fe菱形子结构在SS铰链处明显折叠:NiS2平面与FeS2平面法线之间的角度为64.85(6)°。很大程度上由于此折叠,镍铁距离相对较短,为2.9195(8)Å。包含新的不饱和“ S 4 ”配体(两个C = C双键)的复杂阳离子的结构数据与已知的包含饱和“ S <配体主链中具有相同碳原子数的sub> 4 '-配体类似物,即具有[Ni( L )FeCp(CO)] + < / sup>(作为PF 6 -盐,CH 2 Cl 2 溶剂化物)和[Ni(< em> L )FeCp *(CO)] sups + (作为PF 6 -盐),其中( L 2-是[S-CH 2 -CH 2 -S-(CH 2 3 -S-CH 2 -CH 2 -S] 2-和Cp - 是环戊二烯基。饱和类似物[Ni( L )FeCp(CO)] + 和[Ni( L )FeCp *(CO)] + 具有相似的Ni-Fe距离:对于两种配合物,分别为3.1727(6),3.1529(7)Å(晶胞中的两个独立分子)和3.111(5)Å,而[Ni(<这里描述的em> L ')FeCp *(CO)] sups + 以更短的Ni-Fe距离[2.9196(8)Å]脱颖而出。此外,[Ni( L )FeCp(CO)] + 和[Ni( L )FeCp *(CO)] + 显示了两者之间的面内折叠角相似:分别为39.56(5),41.99(5)(晶胞中的独立分子)和47.22(9)°,而[Ni( L < / em>')FeCp *(CO)] + 具有明显得多的折叠[64.85(6)°]。考虑到较大的折叠角和较短的Ni-Fe距离在结构上更接近酶,因此类型(SC 2 4 '-配体的不饱和键sub> -SC 3 -SC 2 -S) 2-似乎增加了与该酶结构模型相似的酶类型[Ni('S 4 ')FeCp R (CO)] + (Cp R = Cp或Cp *)。

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