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Organising multi-dimensional biological image information: the BioImage Database.

机译:组织多维生物图像信息:生物图像数据库。

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摘要

Nowadays it is possible to unravel complex information at all levels of cellular organization by obtaining multi-dimensional image information. At the macromolecular level, three-dimensional (3D) electron microscopy, together with other techniques, is able to reach resolutions at the nanometer or subnanometer level. The information is delivered in the form of 3D volumes containing samples of a given function, for example, the electron density distribution within a given macromolecule. The same situation happens at the cellular level with the new forms of light microscopy, particularly confocal microscopy, all of which produce biological 3D volume information. Furthermore, it is possible to record sequences of images over time (videos), as well as sequences of volumes, bringing key information on the dynamics of living biological systems. It is in this context that work on BioImage started two years ago, and that its first version is now presented here. In essence, BioImage is a database specifically designed to contain multi-dimensional images, perform queries and interactively work with the resulting multi-dimensional information on the World Wide Web, as well as accomplish the required cross-database links. Two sister home pages of BioImage can be accessed at http://www. bioimage.org and http://www-embl.bioimage.org
机译:如今,通过获取多维图像信息,可以在细胞组织的各个层次上解开复杂的信息。在大分子水平上,三维(3D)电子显微镜以及其他技术能够达到纳米级或亚纳米级的分辨率。信息以3D体积的形式传递,其中包含给定功能的样本,例如给定大分子内的电子密度分布。在新形式的光学显微镜(尤其是共聚焦显微镜)的细胞水平上会发生相同的情况,所有这些都会产生生物3D体积信息。此外,可以记录随时间变化的图像序列(视频)以及体积序列,从而带来有关生物系统动态变化的关键信息。在此背景下,两年前就开始了BioImage的工作,现在在这里展示其第一个版本。本质上,BioImage是一个专门设计的数据库,用于包含多维图像,执行查询并与万维网上生成的多维信息进行交互工作,以及完成所需的跨数据库链接。可以从http:// www访问BioImage的两个姐妹主页。 bioimage.org和http://www-embl.bioimage.org

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