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Heuristic informational analysis of sequences.

机译:序列的启发式信息分析。

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摘要

Nucleotide or amino-acid sequences are interpreted as successions of words of length k (k-tuples) the frequencies of which are highly variable in different statistical populations of genes or proteins. After building k-tuple reference tables from coherent subsets or entire data banks, the local information content profile of individual sequences is drawn. Anomalous regions (peaks or depressions) of such a profile can lead to the discovery and identification of specific sequence patterns. Along the same principle, the simultaneous use of two reference statistical populations and the computation of an index combining the two information profiles lead to a general and powerful discriminant analysis methods. The identification of a "signal" associated with gene conversion, the introns/exons discrimination and the location of function specific patterns in proteins are given as examples of successful applications of this heuristic informational approach.
机译:核苷酸或氨基酸序列被解释为长度为k(k元组)的单词的连续序列,其频率在基因或蛋白质的不同统计种群中高度可变。从相干子集或整个数据库建立k元组参考表后,将绘制各个序列的本地信息内容配置文件。这种轮廓的异常区域(峰或凹陷)可导致发现和识别特定序列模式。遵循相同的原则,同时使用两个参考统计种群以及结合两个信息配置文件的索引计算导致了一种通用而强大的判别分析方法。作为这种启发式信息方法成功应用的实例,给出了与基因转换,内含子/外显子区分以及蛋白质中功能特定模式相关的“信号”的鉴定。

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