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A Run-Length Encoding Approach for Path Analysis of C. elegans Search Behavior

机译:秀丽隐杆线虫搜索行为路径分析的游程编码方法

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摘要

The nematode Caenorhabditis elegans explores the environment using a combination of different movement patterns, which include straight movement, reversal, and turns. We propose to quantify C. elegans movement behavior using a computer vision approach based on run-length encoding of step-length data. In this approach, the path of C. elegans is encoded as a string of characters, where each character represents a path segment of a specific type of movement. With these encoded string data, we perform k-means cluster analysis to distinguish movement behaviors resulting from different genotypes and food availability. We found that shallow and sharp turns are the most critical factors in distinguishing the differences among the movement behaviors. To validate our approach, we examined the movement behavior of tph-1 mutants that lack an enzyme responsible for serotonin biosynthesis. A k-means cluster analysis with the path string-encoded data showed that tph-1 movement behavior on food is similar to that of wild-type animals off food. We suggest that this run-length encoding approach is applicable to trajectory data in animal or human mobility data.
机译:线虫秀丽隐杆线虫利用不同的运动方式组合探索环境,包括直线运动,反转和转弯。我们建议使用基于步长数据的游程编码的计算机视觉方法来量化线虫的运动行为。在这种方法中,秀丽隐杆线虫的路径被编码为字符串,其中每个字符代表特定类型的运动的路径段。利用这些编码的字符串数据,我们执行k均值聚类分析以区分由不同基因型和食物供应量引起的运动行为。我们发现,浅弯和急弯是区分运动行为之间差异的最关键因素。为了验证我们的方法,我们检查了tph-1突变体的运动行为,该突变体缺乏负责血清素生物合成的酶。用路径字符串编码的数据进行的k均值聚类分析表明,食物上的tph-1运动行为与食物外的野生型动物相似。我们建议这种行程编码方法适用于动物或人类活动性数据中的轨迹数据。

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