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Spatial distributions at equilibrium under heterogeneous transient subdiffusion

机译:非均质瞬态扩散作用下平衡态的空间分布

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摘要

Experimental measurements of the mobility of macromolecules, especially proteins, in cells and their membranes consistently report transient subdiffusion with possibly position-dependent—non-homogeneous—properties. However, the spatiotemporal dynamics of protein mobility when transient subdiffusion is restricted to a subregion of space is still unclear. Here, we investigated the spatial distribution at equilibrium of proteins undergoing transient subdiffusion due to continuous-time random walks (CTRW) in a restricted subregion of a two-dimensional space. Our Monte-Carlo simulations suggest that this process leads to a non-homogeneous spatial distribution of the proteins at equilibrium, where proteins increasingly accumulate in the CTRW subregion as its anomalous properties are increasingly marked. In the case of transient CTRW, we show that this accumulation is dictated by the asymptotic Brownian regime and not by the initial anomalous transient dynamics. Moreover, our results also show that this dominance of the asymptotic Brownian regime cannot be simply generalized to other scenarios of transient subdiffusion. In particular, non-homogeneous transient subdiffusion due to hindrance by randomly-located immobile obstacles does not lead to such a strong local accumulation. These results suggest that, even though they exhibit the same time-dependence of the mean-squared displacement, the different scenarios proposed to account for subdiffusion in the cell lead to different protein distribution in space, even at equilibrium and without coupling with reaction.
机译:对大分子(尤其是蛋白质)在细胞及其膜中的迁移率进行的实验测量一致地报告了瞬态亚扩散,其可能具有位置依赖性(非均质)特性。但是,当暂时的子扩散仅限于空间的一个子区域时,蛋白质迁移率的时空动力学仍然不清楚。在这里,我们研究了二维空间的受限子区域中由于连续时间随机游走(CTRW)而经历瞬时亚扩散的蛋白质平衡时的空间分布。我们的蒙特卡洛模拟表明,此过程会导致蛋白质在平衡状态下出现非均匀的空间分布,其中蛋白质的异常性质越来越明显,因此蛋白质在CTRW子区域中的蓄积越来越多。在瞬态CTRW的情况下,我们表明这种积累是由渐近的布朗体制决定的,而不是由最初的异常瞬态动力学决定的。此外,我们的结果还表明,渐近布朗体制的这种优势不能简单地推广到其他瞬态扩散的情况。尤其是,由于随机放置的固定障碍物的阻碍而导致的非均匀瞬态子扩散不会导致如此强烈的局部累积。这些结果表明,即使它们表现出相同的均方位移时间依存性,但考虑到细胞中的亚扩散而提出的不同情况也导致了蛋白质在空间中的不同分布,即使在平衡时也不与反应耦合。

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