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A singular value decomposition Bayesian multiple-trait and multiple-environment genomic model

机译:奇异值分解贝叶斯多性状和多环境基因组模型

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摘要

Today, breeders perform genomic-assisted breeding to improve more than one trait. However, frequently there are several traits under study at one time, and the implementation of current genomic multiple-trait and multiple-environment models is challenging. Consequently, we propose a four-stage analysis for multiple-trait data in this paper. In the first stage, we perform singular value decomposition (SVD) on the resulting matrix of trait responses; in the second stage, we perform multiple trait analysis on transformed responses. In stages three and four, we collect and transform the traits back to their original state and obtain the parameter estimates and the predictions on these scale variables prior to transformation. The results of the proposed method are compared, in terms of parameter estimation and prediction accuracy, with the results of the Bayesian multiple-trait and multiple-environment model (BMTME) previously described in the literature. We found that the proposed method based on SVD produced similar results, in terms of parameter estimation and prediction accuracy, to those obtained with the BMTME model. Moreover, the proposed multiple-trait method is atractive because it can be implemented using current single-trait genomic prediction software, which yields a more efficient algorithm in terms of computation.
机译:如今,育种人员进行基因组辅助育种以改善多个特性。然而,经常一次要研究多个特征,并且当前基因组多特征和多环境模型的实施具有挑战性。因此,本文提出了多特征数据的四阶段分析。在第一阶段,我们对特质响应的结果矩阵执行奇异值分解(SVD)。在第二阶段,我们对转换后的响应执行多特征分析。在第三和第四阶段,我们收集特征并将其转换回其原始状态,并在转换之前获得这些比例变量的参数估计和预测。在参数估计和预测准确性方面,将所提出的方法的结果与文献中先前描述的贝叶斯多特征和多环境模型(BMTME)的结果进行了比较。我们发现,基于SVD的方法在参数估计和预测精度方面产生的结果与BMTME模型获得的结果相似。而且,所提出的多特征方法是吸引人的,因为它可以使用当前的单特征基因组预测软件来实现,这在计算方面产生了更有效的算法。

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