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Influence of solvent on protein dynamics and activity.

机译:溶剂对蛋白质动力学和活性的影响。

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摘要

The microscopic picture of protein dynamics provides insight into the protein functionality. It was accepted earlier by many researchers that protein dynamics and activity are related to the solvent and its viscosity. However the detailed mechanism of the solvent-protein interactions is not fully understood. On the other hand, a connection between the appearance of measurable activity and the "dynamic transition" in proteins has been observed. The "dynamic transition" is marked by a sharp rise in the mean squared atomic displacement, , in proteins occurring at TD ∼ 200--230 K. Many contradicting models have been proposed to describe the origin of this phenomenon including a recent idea that relates it to the sudden change in a property of the hydration water. After decades of studies, the origin of the dynamic transition and the role of solvent in protein dynamics remain a subject of active discussions.;Combining dielectric spectroscopy and neutron scattering techniques, we are able to follow protein dynamics over an extremely broad frequency and temperature range. We identify several relaxation processes in dielectric spectra of the hydrated lysozyme. We assign the main observed dielectric relaxation process to the structural relaxation of the protein-water coupled motion. Based on analysis of neutron spectroscopy and simulations results, we ascribe the slower dielectric relaxation process to a global large-scale motion of the protein.;We demonstrate that the sharp rise in is just a result of the protein-water coupled relaxation reaching the limit of the experimental frequency window of the neutron spectrometer. Our results show no sharp change in temperature variation of the structural relaxation of both the protein and its hydration water. Light scattering measurements of hydrated lysozyme indicate a broad glass transition at Tg ∼ 180+/-15 K. We emphasize that the dynamic transition (as measured by ) and the glass transition of the system happening at Tg ∼ 180+/-15 K are not the same phenomena.;A strong coupling of protein activity and its dynamics has been observed in protein solutions in glycerol-water and in sucrose-water. The analysis, however, indicates that protein dynamics and its activity are not always coupled to the solvent viscosity. The microscopic mechanism of this decoupling remains unclear.
机译:蛋白质动力学的微观图片提供了对蛋白质功能的深入了解。早期,许多研究人员接受了蛋白质动力学和活性与溶剂及其粘度有关的信息。但是,溶剂-蛋白质相互作用的详细机制尚不完全清楚。另一方面,已经观察到可测量活性的出现与蛋白质中的“动态转变”之间的联系。在TD〜200--230 K处发生的蛋白质中,“动态转变”的特征是原子平方均方根值急剧上升。已经提出了许多相互矛盾的模型来描述这种现象的起源,包括一个与之相关的最新观点。这是因为补水的特性突然改变。经过数十年的研究,动态跃迁的起源和溶剂在蛋白质动力学中的作用仍然是活跃的讨论话题;结合介电谱和中子散射技术,我们能够在非常宽的频率和温度范围内追踪蛋白质动力学。我们确定了水合溶菌酶的介电谱中的几个弛豫过程。我们将主要观察到的介电弛豫过程分配给蛋白质-水耦合运动的结构弛豫。基于中子光谱分析和模拟结果,我们将较慢的介电弛豫过程归因于蛋白质的全球大规模运动。;我们证明急剧增加只是蛋白质-水耦合弛豫达到极限的结果中子光谱仪的实验频率窗口我们的结果表明,蛋白质及其水合水的结构松弛温度变化没有明显变化。水合溶菌酶的光散射测量表明,在Tg〜180 +/- 15 K处有宽的玻璃化转变。不相同的现象。在甘油-水和蔗糖-水中的蛋白质溶液中观察到蛋白质活性及其动力学的强耦合。然而,分析表明蛋白质动力学及其活性并不总是与溶剂粘度相关。这种去耦的微观机制仍然不清楚。

著录项

  • 作者

    Khodadadi, Sheila.;

  • 作者单位

    The University of Akron.;

  • 授予单位 The University of Akron.;
  • 学科 Polymer chemistry.
  • 学位 Ph.D.
  • 年度 2009
  • 页码 206 p.
  • 总页数 206
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

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