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Discovery of novel genes that cause rare pediatric renal diseases using whole-exome sequencing

机译:使用全基因组测序发现导致罕见的小儿肾脏疾病的新基因

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摘要

Over the past 10 years, next-generation sequencing methodologies have rapidly matured into an inexpensive, reliable, widely available, and highly efficient set of tools to do genomic research. Our laboratory pioneered the use of one of these ground-breaking methodologies, known as whole-exome sequencing (WES), which allows for high throughput sequencing of all of the genome's protein coding regions (exons). WES has several advantages over whole-genome sequencing: it is considerably cheaper since it does not include 99% of the genome that does not encode proteins, data interpretation is simpler because one can rely on amino acid conservation to prioritize mutations, and it focuses on data where the vast majority of mutations causing Mendelian diseases cluster. The emergence of WES (and WGS) has had a major impact on genetic research because for the first time, groups of isolated probands with similar phenotypes can be used as a cohort for gene discovery projects. We set out to use this technology to identify novel disease-causing genes in two large cohorts of patients with rare pediatric kidney disease, namely atypical hemolytic-uremic syndrome (aHUS) and Dent's disease (DD).
机译:在过去的10年中,下一代测序方法已迅速发展成为一种廉价,可靠,可广泛获得的高效基因组研究工具。我们的实验室率先使用了这些突破性的方法之一,称为全外显子组测序(WES),该方法可对所有基因组蛋白质编码区(外显子)进行高通量测序。与全基因组测序相比,WES具有多个优势:由于它不包含不编码蛋白质的99%的基因组,因此价格便宜得多,因为人们可以依靠氨基酸保守性对突变进行优先级排序,因此数据解释更为简单,并且它专注于导致孟德尔疾病的绝大多数突变聚集的数据。 WES(和WGS)的出现对基因研究产生了重大影响,因为第一次,具有相似表型的分离的先证者群体首次可以用作基因发现项目的队列。我们着手使用这项技术在两个罕见的小儿肾脏病(即非典型溶血尿毒症综合征(aHUS)和登特氏病(DD))患者的大型队列中鉴定新的致病基因。

著录项

  • 作者

    Lemaire, Mathieu.;

  • 作者单位

    Yale University.;

  • 授予单位 Yale University.;
  • 学科 Genetics.;Medicine.;Bioinformatics.
  • 学位 Ph.D.
  • 年度 2015
  • 页码 341 p.
  • 总页数 341
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

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