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Pharmacokinetic-rate imaging of optical fluorophores and breast cancer diagnosis.

机译:光学荧光团的药代动力学成像和乳腺癌诊断。

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摘要

In this thesis, we study the value of near infra-red (NIR) optical imaging and spectroscopy techniques for breast cancer detection, diagnosis, and staging. In particular, we develop new mathematical models and computational techniques to investigate the value of endogenous contrast provided by NIR imaging and spectroscopy; and the pharmacokinetic information provided by optical fluorophores, specifically, indocyanine green (ICG).;First, we developed three different compartmental models to model the pharmacokinetics of ICG for healthy and malignant tissue. We introduced a systematic and robust approach to estimate and analyze ICG pharmacokinetics based on the extended Kalman filtering (EKF) framework. Additionally, we introduce an information theoretic criteria for the best compartmental model order selection. We tested our approach using the ICG concentration data acquired from four Fischer rats carrying adenocarcinoma tumor cells. Our animal study indicates that pharmacokinetic rates are potentially useful parameters for tumor differentiation and staging.;Secondly, we develop a method of forming pharmacokinetic-rate images of ICG. To form pharmacokinetic-rate images, we first obtain a sequence of ICG concentration images using the differential diffuse optical tomography technique. We next employ a two-compartment model composed of plasma, and extracellular-extravascular space (EES), and estimate the pharmacokinetic-rates and concentrations in each compartment using the EKF framework. The pharmacokinetic-rate images of the three patient show that the rates from the tumor region and outside the tumor region are statistically different. Additionally, the ICG concentrations in plasma, and the EES compartments are higher around the tumor region agreeing with the hypothesis that around the tumor region ICG may act as a diffusible extravascular flow in compromised capillary of cancer vessels.;Thirdly, we present a new method to form pharmacokinetic-rate images of optical fluorophores directly from NIR boundary measurements. We first derive a mapping from spatially resolved pharmacokinetic-rates to NIR boundary measurements by combining compartmental modeling with a diffusion based NIR photon propagation model. We express this mapping as a state-space equation. Next, we introduce a spatio-temporal prior model for the pharmacokinetic-rate images and combine it with the state-space equation. We address the image formation problem using the EKF framework. We analyzed the computational complexity of the resulting algorithms and evaluate their performance in numerical simulations. Simulation results show that the resulting algorithms are more robust and lead to higher signal-to-noise ratio as compared to existing approaches where the reconstruction of concentrations and compartmental modeling are treated separately. Additionally, we reconstructed pharmacokinetic-rate images using in vivo data obtained from three patients with breast tumors. The reconstruction results show that the pharmacokinetic-rates of ICG are higher inside the tumor region as compared to the surrounding tissue.;Finally, we present a study on the evaluation of a set of optical features extracted from in vivo NIR spectroscopy data obtained from 116 patients with breast tumors for breast cancer diagnosis. The in vivo data was collected from 44 patients with malignant and 72 patients with benign tumors. Three features, relative blood volume concentration, oxygenation desaturation and the size of the tumor, are used to differentiate benign and malignant tumors. The diagnostic capability of these features are evaluated using different classifiers including nearest mean, neural network, support vector machine, Parzen, and normal density-based classifiers. The area under the receiver operating characteristics curve of the nearest mean classifier using the three features yields the best value of 0.91. This result suggests that relative blood volume concentration, oxygenation desaturation and size information can differentiate malignant and benign breast tumors with a relatively high precision.
机译:在本文中,我们研究了近红外(NIR)光学成像和光谱技术在乳腺癌检测,诊断和分期中的价值。特别是,我们开发了新的数学模型和计算技术来研究NIR成像和光谱学提供的内源性对比的价值; ;以及光学荧光团提供的药代动力学信息,特别是吲哚花青绿(ICG)。首先,我们开发了三种不同的隔室模型来模拟ICG对健康和恶性组织的药代动力学。我们基于扩展的卡尔曼滤波(EKF)框架引入了一种系统且鲁棒的方法来评估和分析ICG药代动力学。此外,我们介绍了最佳隔间模型订单选择的信息理论标准。我们使用从四只携带腺癌肿瘤细胞的Fischer大鼠获得的ICG浓度数据测试了我们的方法。我们的动物研究表明,药代动力学速率对于肿瘤的分化和分期可能是有用的参数。其次,我们开发了一种形成ICG药代动力学图像的方法。为了形成药代动力学速率图像,我们首先使用差分扩散光学层析成像技术获得一系列ICG浓度图像。接下来,我们采用由血浆和细胞外血管外空间(EES)组成的两室模型,并使用EKF框架估算每个室中的药代动力学速率和浓度。三名患者的药代动力学图像显示,来自肿瘤区域和肿瘤区域外部的比率在统计学上是不同的。此外,在肿瘤区域周围血浆和EES隔室中的ICG浓度较高,这与肿瘤区域周围ICG可能在癌细胞受损的毛细血管中作为弥散性血管外血流的假设相吻合。第三,我们提出了一种新方法直接从NIR边界测量中形成光学荧光团的药代动力学速率图像。我们首先通过将隔室模型与基于扩散的NIR光子传播模型相结合,从空间分辨的药代动力学速率导出映射到NIR边界。我们将此映射表示为状态空间方程。接下来,我们为药代动力学速率图像引入时空先验模型,并将其与状态空间方程相结合。我们使用EKF框架解决图像形成问题。我们分析了所得算法的计算复杂性,并在数值模拟中评估了它们的性能。仿真结果表明,与分别处理浓度重建和区室建模的现有方法相比,所得算法更加健壮,并导致更高的信噪比。此外,我们使用从三名乳腺肿瘤患者获得的体内数据重建了药代动力学图像。重建结果表明,与周围组织相比,ICG在肿瘤区域内的药代动力学速率更高;最后,我们对从116位获得的体内NIR光谱数据中提取的一组光学特征进行评估的研究患有乳腺肿瘤的患者用于乳腺癌的诊断。体内数据收集自44例恶性肿瘤患者和72例良性肿瘤患者。相对血容量浓度,氧合脱饱和和肿瘤大小这三个特征可用来区分良性和恶性肿瘤。使用不同的分类器(包括最近的均值,神经网络,支持向量机,Parzen和基于正态密度的分类器)评估这些特征的诊断能力。使用这三个特征的最接近均值分类器的接收器工作特性曲线下的面积得出的最佳值为0.91。该结果表明相对血容量浓度,氧合去饱和度和大小信息可以相对较高的精度区分恶性和良性乳腺肿瘤。

著录项

  • 作者

    Alacam, Burak.;

  • 作者单位

    Rensselaer Polytechnic Institute.;

  • 授予单位 Rensselaer Polytechnic Institute.;
  • 学科 Engineering Biomedical.;Engineering Electronics and Electrical.
  • 学位 Ph.D.
  • 年度 2008
  • 页码 159 p.
  • 总页数 159
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

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