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Simulation of Oscillatory Dynamics of Blood Testosterone Levels Using the Crossover Method

机译:交叉法模拟血睾酮水平振荡动力学

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Blood testosterone levels oscillate periodically in humans. The in vivo dynamics of this biochemical system cannot be simulated in silico using a continuous deterministic solution of a previously reported mathematical model. The use of the stochastic simulation algorithm (SSA), however, has been reported to generate sustained oscillations that are qualitatively and quantitatively consistent with the experimental observations. Although the SSA is capable of accurately simulating a biochemical network, it is extremely inefficient from a computational standpoint. In this work, we have attempted to simulate the above mentioned model using a deterministic-stochastic crossover method, for three separate sets of parameters. Each time, not only did the results show the existence of sustained oscillations but also that the computational time was at least four times lower than the corresponding SSA solution. The crossover method can hence be proposed as a viable alternative to the SSA for simulating biochemical systems that are commonly encountered in systems biology applications.
机译:血睾酮水平定期振荡人类。使用先前报告的数学模型的连续确定性解,不能在硅中模拟这种生化系统的体内动态。利用随机模拟算法(SSA),然而,有报道以产生持续振荡是定性和定量与实验结果是一致的。尽管SSA能够精确地模拟生化网络,但从计算角度来看,它非常低效。在这项工作中,我们尝试使用确定性 - 随机交叉方法模拟上述模型,用于三组单独的参数。每次,不仅结果显示了持续振荡的存在,而且还有计算时间比相应的SSA解决方案低至少四倍。因此,可以提出交叉方法作为用于模拟在系统生物学应用中通常遇到的生物化学系统的SSA的可行替代方案。

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