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Faster Recovery of Approximate Periods over Edit Distance

机译:在编辑距离上更快地恢复近似时期

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The approximate period recovery problem asks to compute all approximate word-periods of a given word S of length n: all primitive words P (|P| = p) which have a periodic extension at edit distance smaller than τ_p from S, where τ_p = [n/((3.75+ε)·p)] for some ε >0. Here, the set of periodic extensions of P consists of all finite prefixes of P~∞. We improve the time complexity of the fastest known algorithm for this problem of Amir et. al. [Theor. Comput. Sci., 2018] from O(n~(4/3)) to O(n log n). Our tool is a fast algorithm for Approximate Pattern Matching in Periodic Text. We consider only verification for the period recovery problem when the candidate approximate word-period P is explicitly given up to cyclic rotation; the algorithm of Amir et al. reduces the general problem in O(n) time to a logarithmic number of such more specific instances.
机译:近似时段恢复问题要求计算长度n的给定词S的所有近似词周期:所有基元字的P(| p | = p),其在从s的编辑距离处具有周期性扩展,其中τ_p= [N /((3.75 +ε)·p)]对于一些ε> 0。这里,P的周期性扩展集由P〜∞的所有有限前缀组成。我们提高了amir等问题最快已知算法的时间复杂性。 al。 [你。计算。 SCI。,2018]来自O(n〜(4/3))到O(n log n)。我们的工具是一种快速算法,用于定期文本中的近似模式匹配。当明确地将候选近似词段P明确循环旋转时,我们仅考虑对时期恢复问题的验证; Amir等人的算法。将O(n)时间中的一般问题降低到诸多特定实例的对数数。

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