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Engineering oxidoreductases: maquette proteins designed from scratch

机译:工程氧化还原酶:由划痕设计的Maquette蛋白

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The study of natural enzymes is complicated by the fact that only the most recent evolutionary progression can be observed. In particular, natural oxidoreductases stand out as profoundly complex proteins in which the molecular roots of function, structure and biological integration are collectively intertwined and individually obscured. In the present paper, we describe our experimental approach that removes many of these often bewildering complexities to identify in simple terms the necessary and sufficient requirements for oxidoreductase function. Ours is a synthetic biology approach that focuses on from-scratch construction of protein maquettes designed principally to promote or suppress biologically relevant oxidations and reductions. The approach avoids mimicry and divorces the commonly made and almost certainly false ascription of atomistically detailed functionally unique roles to a particular protein primary sequence, to gain a new freedom to explore protein-based enzyme function. Maquette design and construction methods make use of iterative steps, retraceable when necessary, to successfully develop a protein family of sturdy and versatile single-chain three- and four-α-helical structural platforms readily expressible in bacteria. Internally, they prove malleable enough to incorporate in prescribed positions most natural redox cofactors and many more simplified synthetic analogues. External polarity, charge-patterning and chemical linkers direct maquettes to functional assembly in membranes, on nanostructured titania, and to organize on selected planar surfaces and materials. These protein maquettes engage in light harvesting and energy transfer, in photochemical charge separation and electron transfer, in stable dioxygen binding and in simple oxidative chemistry that is the basis of multi-electron oxidative and reductive catalysis.
机译:天然酶的研究是由只有最近的进化过程可以观察到的事实复杂化。具体而言,自然氧化还原酶脱颖而出深刻复杂的蛋白质,其中的功能,结构和生物整合分子根共同交织,个别遮挡。在本论文中,我们描述了我们的实验方法,消除许多这些往往令人眼花缭乱的复杂性,以简单来说识别氧化还原酶功能的充分必要要求。我国是一个合成生物学的方法,重点从划痕的结构设计,主要是为了促进或抑制生物学相关的氧化和还原蛋白的设计草图的。该方法避免了模仿和离婚的通常由与atomistically详细的功能独特的角色,以一种特定的蛋白质主要序列,几乎肯定是假的归属,以获得新的自由探索基于蛋白质的酶的功能。初步设计的模型设计和施工方法利用迭代步骤,可追溯必要的时候,成功开发坚固的和通用的单链三和四α螺旋结构平台,易使细菌表达的蛋白质家族。在内部,他们证明延展性足够在特定的位置最自然的氧化还原辅助因子和许多简化合成类似物纳入。外部极性,电荷图案化和在膜以功能性组件化学接头直接设计草图,在纳米结构的二氧化钛,并组织所选择的平面表面和材料。这些蛋白质的设计草图从事光捕获和能量转移,在光化学电荷分离和电子传递,在稳定分子氧结合和简单氧化化学即多电子氧化和还原催化的基础。

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