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Parallel Numerical P Systems Using a MIMD Based Architecture

机译:使用基于MIMD的架构的并行数字P系统

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A membrane, or P system, is a biologically inspired computational modelling paradigm that simulates both the structure and dynamical processes of a cellular mechanism. The computational power of a membrane system is derived from the non-deterministic nature and the inherent parallelism of these structures and processes. Recently a number of researchers have tried to utilise this powerful computational paradigm to solve complex problems. Currently, parallelisation in practical implementations of this paradigm use a SIMD (Single Instruction Multiple Data) type approach, normally focusing on a specific aspect of the P system structure and applying this to the rest of the system in a parallel manner; in a few cases the rule selection algorithm has been parallelised for this purpose, the rules themselves being applied in a traditional sequential manner. In this paper we propose that a MIMD (Multiple Instruction Multiple Data) architecture is a closer representation of the biological membrane/P system structure and allows a degree of parallelism that is not possible using SIMD type approaches. We identify the elements of the membrane system that can be parallelised and also demonstrate how these elements can be parallelised using a MIMD approach. We examine how the XMGS XS1 Simulator, which has an architecture suited to MIMD, can be used to implement a Numerical P system. Furthermore we suggest that the temporal aspects of cellular aging may be simulated by a simple extension to the standard P system model.
机译:膜或P系统是一种生物学启发的计​​算建模范式,用于模拟蜂窝机构的结构和动态过程。膜系统的计算能力来自于这些结构和过程的非确定性性质和固有的并行性。最近,许多研究人员试图利用这种强大的计算范例来解决复杂问题。目前,此范例的实际实现中的平行化使用SIMD(单指令多数据)类型方法,通常专注于P系统结构的特定方面,并以并行方式将其应用于系统的其余部分;在几个情况下,规则选择算法已平行为此目的,规则本身以传统的顺序方式应用。在本文中,我们提出了MIMD(多指令多数据)架构是仔细的生物膜/ P系统结构的表示,并且允许使用SIMD类型方法不可能的平行度。我们识别可以并行化的膜系统的元素,并且还展示这些元素如何使用MIMD方法并行化。我们检查如何使用适合MIMD的架构的XMGS XS1模拟器如何实现数字P系统。此外,我们建议可以通过对标准P系统模型的简单扩展来模拟细胞老化的时间方面。

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