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Parallel Numerical P systems using a MIMD based architecture

机译:使用基于MIMD的架构的并行数值P系统

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A membrane, or P system, is a biologically inspired computational modelling paradigm that simulates both the structure and dynamical processes of a cellular mechanism. The computational power of a membrane system is derived from the non-deterministic nature and the inherent parallelism of these structures and processes. Recently a number of researchers have tried to utilise this powerful computational paradigm to solve complex problems. Currently, parallelisation in practical implementations of this paradigm use a SIMD (Single Instruction Multiple Data) type approach, normally focusing on a specific aspect of the P system structure and applying this to the rest of the system in a parallel manner; in a few cases the rule selection algorithm has been parallelised for this purpose, the rules themselves being applied in a traditional sequential manner. In this paper we propose that a MIMD (Multiple Instruction Multiple Data) architecture is a closer representation of the biological membrane/P system structure and allows a degree of parallelism that is not possible using SIMD type approaches. We identify the elements of the membrane system that can be parallelised and also demonstrate how these elements can be parallelised using a MIMD approach. We examine how the XMOS XS1 Simulator, which has an architecture suited to MIMD, can be used to implement a Numerical P system. Furthermore we suggest that the temporal aspects of cellular aging may be simulated by a simple extension to the standard P system model.
机译:膜或P系统是一种受生物启发的计算建模范例,可模拟细胞机制的结构和动力学过程。膜系统的计算能力源于这些结构和过程的不确定性和固有的并行性。最近,许多研究人员试图利用这种强大的计算范例来解决复杂的问题。当前,该范例的实际实现中的并行化使用SIMD(单指令多数据)类型的方法,通常着重于P系统结构的特定方面,并以并行方式将其应用于系统的其余部分。在少数情况下,规则选择算法已为此目的而并行化,规则本身以传统的顺序方式应用。在本文中,我们提出MIMD(多指令多数据)体系结构是生物膜/ P系统结构的更接近的表示,并允许使用SIMD类型方法无法实现的并行度。我们确定了膜系统中可以平行化的元素,并演示了如何使用MIMD方法将这些元素平行化。我们研究了如何使用具有适合MIMD的架构的XMOS XS1 Simulator来实现数值P系统。此外,我们建议可以通过对标准P系统模型的简单扩展来模拟细胞衰老的时间方面。

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